AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 10, 2004 11:47PM
Howdy Ziad and/or Rick:

I am at a loss to explain this, help is kindly appreciated:

foreach x (001)
foreach H (lh)
SurfSmooth -spec bob"$x"_"$H"_mesh160_std.spec -surf_A stdSphere.reg -add_index -met LB_FEM -input /bob/bob.participants/"$x"/imaging.data/results/"$H".160.bob.deconvolution+reg."$LC"."$x".1D -Niter 100 -fwhm 8 -add_index -output /bob/bob.participants/"$x"/imaging.data/results/"$H".160.sm8.bob.deconvolution+reg."$LC"."$x".1D
end
end

screen output =

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #0/1(Local Domain Parent), loading ...
Error SurfSmooth: Failed to read input surface.

Where the input surface contains:

#define various States
StateDef = stdSmoothwm
StateDef = stdPial
StateDef = stdInflated
StateDef = stdSphere
StateDef = stdWhite
StateDef = stdSphere.reg

NewSurface
SurfaceFormat = ASCII
SurfaceType = FreeSurfer
FreeSurferSurface = bob001_lh_mesh160_stdSmoothwm.asc
LocalDomainParent = SAME
SurfaceState = stdSmoothwm
EmbedDimension = 3
Anatomical = Y

.............. etc..

NewSurface
SurfaceFormat = ASCII
SurfaceType = FreeSurfer
FreeSurferSurface = bob001_lh_mesh160_stdSphere.reg.asc
LocalDomainParent = bob001_lh_mesh160_stdSmoothwm.asc
SurfaceState = stdSphere.reg
EmbedDimension = 3

Thanks again,
Jeremy Skipper
Subject Author Posted

SurfSmooth madness

Jeremy Skipper February 10, 2004 11:47PM

Re: SurfSmooth madness

Ziad S Saad February 11, 2004 08:53AM

Re: SurfSmooth madness

Jeremy Skipper February 11, 2004 12:09PM

Re: SurfSmooth madness

Ziad Saad February 12, 2004 08:02AM

Re: SurfSmooth madness

Jeremy Skipper February 17, 2004 12:29PM

Re: SurfSmooth madness

Jeremy Skipper February 17, 2004 01:48PM