AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
February 19, 2004 11:22AM
Is there a package or can somebody give me some pointers on how to
write shell scripts that need to accept AFNI filenames?

In other words, I want to write a shell script that handles AFNI
filename in the way that the AFNI programs do.


The HowTo pages have sample shell scripts that deal with
AFNI datasets. See [afni.nimh.nih.gov],
and perhaps go to HowTo 05 - group analysis. The "Linux scripts"
under there are good because they deal with multiple subjects.

The most easily forgettable part of doing that is the rule for
view extensions on datasets (orig, acpc and tlrc):

If you supply an input dataset, you must supply the view extension
(because the program is not going to guess). But for any '-prefix'
type option, you do not supply it (because the program will decide
on the view suffix, based on the inputs).

Please let me know if that does not sufficiently address your
questions (if at all :).

- rick

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Re: shell utilities?

rick reynolds February 19, 2004 11:22AM

Re: shell utilities?

rick reynolds March 02, 2004 03:44PM