I'm really stuck here! I'm still trying to align my anatomical volume to my oblique functional slices. I know the alignment information is there in the DICOM files, because another analysis package I've tried (FS-FAST) has picked it up successfully.
I understand 3drotate can do the alignment, but how does one find the proper rotation and translation? Have others been able to do this?
Apologies if I'm missing something obvious--I'm new to AFNI.
thanks again!
-Brendan