Hi, I'm a newbie to AFNI.....when I try to use the to3d function to convert the high resolution 3d scan into a BRIK file, the slices are not properly aligned. Are there any parameters I should add to the to3d command line to solve the problem?
P.S. The scans were obtained from a Semiens Sonata 1.5T magnet, scan sequence should be interpolated (I suppose).
Thanks for help!
Kenneth Yuen