AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ziad
January 07, 2015 11:30AM
Hi Emily,

I would recommend you use the omask option, along with specifying which MNI atlas you want to use (-atlas). Aside from the help for whereami, see examples in this pdf, page 34 in particular.

For the omask option to work, you will need to have the atlas volume on disk in MNI space. AFNI does on the fly space conversions for whereami, but not for the -omask option. So if you don't have atlases on your disk saved in MNI space, let us know which ones you have and which one you want to use and we'll suggest the commands accordingly. To see which atlases you have on disk at the moment, use: apsearch -list_all_afni_P_dsests

cheers,
Ziad
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Subject Author Posted

dividing massive clusters

Elizabeth Mitton May 11, 2004 05:14PM

Re: dividing massive clusters

sally durgerian May 12, 2004 11:44AM

Re: dividing massive clusters

Rich Hammett May 12, 2004 12:47PM

Re: dividing massive clusters

sally durgerian May 12, 2004 02:00PM

Re: dividing massive clusters

Rich Hammett May 12, 2004 03:07PM

Re: dividing massive clusters

Elizabeth Mitton May 12, 2004 05:53PM

Re: dividing massive clusters

dongpsy October 27, 2004 10:26PM

Re: dividing massive clusters

Sally Durgerian October 28, 2004 11:26AM

Re: dividing massive clusters

dongpsy October 29, 2004 09:40PM

Re: dividing massive clusters

g March 07, 2006 09:48PM

Re: dividing massive clusters

Ziad Saad March 07, 2006 09:49PM

Re: dividing massive clusters

Emily December 29, 2014 06:32PM

Re: dividing massive clusters

ziad January 07, 2015 11:30AM