AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Jennine
July 02, 2004 04:04PM
We were formerly asking about thick files, but now we have switched back to the original thin label files for the white matter gray matter interface. We are now trying to create thick files in SUMA by using 3dSurf2Vol.

We are running
3dSurf2Vol \
-spec {$subject}SUM_{$rl}.spec \
-sv {$subject}SUM_SurfVol_Alnd_Exp+orig \
-surf_A wm \
-surf_B pial \
-sdata_1D {$rl}.{$area}.1D \
-data_expr '(sin(a)+sin(b)+sin(c))/3' \
-f_steps 15 \
-grid_parent {$subject}SUM_SurfVol_Alnd_Exp+orig \
-map_func ave \
-prefix {$rl}.{$area}+orig

When we view the output in AFNI we do not see anything.

By the way, here are the first lines of the input 1D file.
36799 1 0 0
36813 1 0 0
37997 1 0 0
37998 1 0 0
37999 1 0 0
38000 1 0 0
38004 1 0 0
38005 1 0 0
38006 1 0 0
38007 1 0 0
38008 1 0 0
38013 1 0 0

Thanks again for your help! and Happy 4th!
Jennine
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Subject Author Posted

More on Label Files

Jennine July 01, 2004 02:44PM

Re: More on Label Files

rick reynolds July 01, 2004 03:08PM

Re: More on Label Files

Jennine July 01, 2004 03:35PM

Re: More on Label Files

Robert Cox July 01, 2004 03:45PM

Thank you

Jennine July 01, 2004 04:23PM

Follow-up on Label Files

Jennine July 02, 2004 04:04PM

Re: Follow-up on Label Files

rick reynolds July 03, 2004 12:27PM

THANKS from the newbie

Jennine July 08, 2004 10:37AM