AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Jennine
July 08, 2004 02:13PM
Well, we thought we were up and running! But we realized that we are experiencing issues with 3dmerge.

Here's the part we're having problems with:

foreach d (0 1)
if ($d == 0) then
set name = All
else
if ($d == 1) then
set name = Early
endif
endif

3dmerge -prefix NEWFILENAME -ghits 2 -gcount 'mask+tlrc[$d]' label.file+tlrc

In the past, using this foreach loop with 3dmerge has worked for us, now we are adding the -gcount option and we're having problems. Our problem is that the files are created and the entire script runs through without any error messages....HOWEVER, 3dmerge is using d = 0 even when it should be using d = 1. It uses the first sub brik throughout (d = 0) even when it is going through the d = 1 loop.

Is there some catch to using gcount or 3dmerge in this way?

Thanks
Jennine
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Subject Author Posted

3dmerge -gcount

Jennine July 08, 2004 02:13PM

Re: 3dmerge -gcount

Robert Cox July 08, 2004 02:22PM

Thanks

Jennine July 09, 2004 09:05AM