HI all
I am trying to compile AFNI on a new WinXP machine with a new installation of Cygwin but I haven't had any success. The compilation breaks down with the following lines:
/bin/rm -f afni
gcc -O2 -ffast-math -DCYGWIN -DNO_GAMMA -DHAVE_XDBE -UUSE_TRACING -DDONT_USE_MCW_MALLOC -o afni afni.o afn
i_func.o afni_widg.o afni_warp.o afni_fimmer.o afni_slice_short.o afni_slice_float.o afni_slice_byte.o af
ni_slice_complex.o afni_pcor.o afni_pcor_float.o afni_transforms.o pbar.o afni_graph.o afni_plugin.o parse
r.o parser_int.o afni_plugout.o afni_fimfunc.o afni_setup.o afni_receive.o mcw_graf.o afni_splash.o afni_p
plug_env.o afni_pplug_2dfunc.o afni_friends.o afni_ttren.o afni_pplug_1dfunc.o afni_driver.o afni_niml.o a
fni_sumafunc.o afni_slice_rgbyte.o afni_version.o afni_lock.o -L. -L/usr/X11R6/lib -lmrix -lcoxplot -lmri
-lvolpack -lf2c -lmri /usr/X11R6/lib/libXm.a -lXp -lXpm -lXext -lXmu -lXt -lSM -lICE -lX11 -lm -lc -lm -l
c
Info: resolving _XtStrings by linking to __imp__XtStrings (auto-import)
Info: resolving _XtShellStrings by linking to __imp__XtShellStrings (auto-import)
Info: resolving _topLevelShellWidgetClass by linking to __imp__topLevelShellWidgetClass (auto-import)
Info: resolving _overrideShellClassRec by linking to __imp__overrideShellClassRec (auto-import)
Info: resolving __XtInheritTranslations by linking to __imp___XtInheritTranslations (auto-import)
Info: resolving __XtInherit by linking to __imp___XtInherit (auto-import)
Info: resolving _applicationShellClassRec by linking to __imp__applicationShellClassRec (auto-import)
Info: resolving _transientShellClassRec by linking to __imp__transientShellClassRec (auto-import)
Info: resolving _wmShellWidgetClass by linking to __imp__wmShellWidgetClass (auto-import)
Info: resolving _transientShellWidgetClass by linking to __imp__transientShellWidgetClass (auto-import)
Info: resolving _objectClassRec by linking to __imp__objectClassRec (auto-import)
Info: resolving _constraafni_plugin.o(.data+0x860):afni_plugin.c: undefined reference to `_PLUGIN_init_plu
g_clust'
afni_plugin.o(.data+0x868):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_copy'
afni_plugin.o(.data+0x870):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_rename'
afni_plugin.o(.data+0x878):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_tag'
afni_plugin.o(.data+0x880):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_power'
afni_plugin.o(.data+0x888):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_stats'
afni_plugin.o(.data+0x890):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_lsqfit'
afni_plugin.o(.data+0x898):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_imreg'
afni_plugin.o(.data+0x8a0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_edit'
afni_plugin.o(.data+0x8a8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_realtime'
afni_plugin.o(.data+0x8b0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_3ddot'
afni_plugin.o(.data+0x8b8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_coorder'
afni_plugin.o(.data+0x8c0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_compress'
afni_plugin.o(.data+0x8c8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_volreg'
afni_plugin.o(.data+0x8d0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_drawdset'
afni_plugin.o(.data+0x8d8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_maskave'
afni_plugin.o(.data+0x8e0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_deconvolve'
afni_plugin.o(.data+0x8e8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_render'
afni_plugin.o(.data+0x8f0):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_notes'
afni_plugin.o(.data+0x8f8):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_histog'
afni_plugin.o(.data+0x900):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_scatplot'
afni_plugin.o(.data+0x908):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_nudge'
afni_plugin.o(.data+0x910):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_second_dataset'
afni_plugin.o(.data+0x918):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_betafit'
afni_plugin.o(.data+0x920):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_zeropad'
afni_plugin.o(.data+0x928):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_3Ddump_V2'
afni_plugin.o(.data+0x930):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_4Ddump'
afni_plugin.o(.data+0x938):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_delay_V2'
afni_plugin.o(.data+0x940):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_extract'
afni_plugin.o(.data+0x948):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_stavg'
afni_plugin.o(.data+0x950):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_reorder'
afni_plugin.o(.data+0x958):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_roiedit'
afni_plugin.o(.data+0x960):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_hemisub'
afni_plugin.o(.data+0x968):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_maskcalc'
afni_plugin.o(.data+0x970):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_maxima'
afni_plugin.o(.data+0x978):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_fourier'
afni_plugin.o(.data+0x980):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_threshold'
afni_plugin.o(.data+0x988):afni_plugin.c: undefined reference to `_PLUGIN_init_plug_permtest'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x1c1b): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x2700): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x2d27): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x2d6d): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x30f4): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(XmString.o)(.text+0x79c5): more undefined references to `_XftTextExtents8' follow
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x5d4): undefined reference to `_FcPatternDestroy'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x5ec): undefined reference to `_XftFontClose'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0xc48): undefined reference to `_XftDrawCreate'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x1326): undefined reference to `_XftDrawString8'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x1450): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x1250): undefined reference to `_XftDrawDestroy'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x1368): undefined reference to `_XftDrawString32'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x13a1): undefined reference to `_XftDrawString16'
/usr/X11R6/lib/libXm.a(FontList.o)(.text+0x14e6): undefined reference to `_XftDrawSetClipRectangles'
/usr/X11R6/lib/libXm.a(RenderTable.o)(.text+0x808): undefined reference to `_FcPatternCreate'
/usr/X11R6/lib/libXm.a(RenderTable.o)(.text+0x839): undefined reference to `_XftFontMatch'
/usr/X11R6/lib/libXm.a(RenderTable.o)(.text+0x85d): undefined reference to `_XftFontOpenPattern'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x356f): undefined reference to `_FcPatternCreate'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x3609): undefined reference to `_XftFontMatch'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x362e): undefined reference to `_XftFontOpenPattern'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x36df): undefined reference to `_FcPatternAddInteger'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x36fb): undefined reference to `_FcPatternAddInteger'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x3717): undefined reference to `_FcPatternAddInteger'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x3733): undefined reference to `_FcPatternAddInteger'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x374f): undefined reference to `_FcPatternAddInteger'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x376b): undefined reference to `_FcPatternAddString'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x3787): undefined reference to `_FcPatternAddString'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x37a3): undefined reference to `_FcPatternAddString'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x37bf): undefined reference to `_FcPatternAddString'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x39e0): undefined reference to `_XftColorAllocValue'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x3a9e): undefined reference to `_XRenderParseColor'
/usr/X11R6/lib/libXm.a(ResConvert.o)(.text+0x4471): undefined reference to `_XftColorFree'
/usr/X11R6/lib/libXm.a(TextOut.o)(.text+0xecc): undefined reference to `_XftTextExtents8'
/usr/X11R6/lib/libXm.a(TextOut.o)(.text+0x20cd): undefined reference to `_XftTextExtents8'
intClassRec by linking to __imp__constraintClassRec (auto-import)
Info: resolving _applicationShellWidgetClass by linking to __imp__applicationShellWidgetClass (auto-import
)
Info: resolving _rectObjClass by linking to __imp__rectObjClass (auto-import)
Info: resolving _rectObjClassRec by linking to __imp__rectObjClassRec (auto-import)
Info: resolving _compositeClassRec by linking to __imp__compositeClassRec (auto-import)
Info: resolving _compositeWidgetClass by linking to __imp__compositeWidgetClass (auto-import)
Info: resolving _widgetClassRec by linking to __imp__widgetClassRec (auto-import)
Info: resolving _wmShellClassRec by linking to __imp__wmShellClassRec (auto-import)
Info: resolving _XtCXtToolkitError by linking to __imp__XtCXtToolkitError (auto-import)
Info: resolving _constraintWidgetClass by linking to __imp__constraintWidgetClass (auto-import)
collect2: ld returned 1 exit status
make: *** [afni] Error 1
(Sorry for the LONG list!!)
Does anybody have any suggestions?
thanks!
giuseppe
