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Sincerely, AFNI HQ

History of AFNI updates  

|
August 06, 2004 01:00PM
Hello-
I tried to run a script using both of the -cbucket and -bucket commands. The result was that the -cbucket file was written while the -bucket filewas not. Is it not possible to create both bucket files?

Thanks!!!

Here is a copy of the script I ran:
set echo

set name = et
rm ${name}.decon.affective* REPEAT.TS* NOVEL.TS*
rm Pleas.Nov+orig* Unpleas.Nov+orig* Combat.Nov+orig* Scrambled+orig*
rm full* Pleas.Rep+orig* Unpleas.Rep+orig* Combat.Rep+orig*
rm D.* S.* SHALL* DEEP*




3dDeconvolve \
#-jobs 2 \
-input $name.ALL.runs.norm+orig \
-concat cat \
-progress 20000 \
-num_stimts 20 \
-stim_file 1 ${name}.ref.decon"[0]" -stim_label 1 D.Rem.Pleas.Nov \
-stim_maxlag 1 9 -iresp 1 D.Rem.Pleas.Nov \
-stim_file 2 ${name}.ref.decon"[1]" -stim_label 2 D.For.Pleas.Nov \
-stim_maxlag 2 9 -iresp 2 D.For.Pleas.Nov \
-stim_file 3 ${name}.ref.decon"[2]" -stim_label 3 D.Rem.Unpleas.Nov \
-stim_maxlag 3 9 -iresp 3 D.Rem.Unpleas.Nov \
-stim_file 4 ${name}.ref.decon"[3]" -stim_label 4 D.For.Unpleas.Nov \
-stim_maxlag 4 9 -iresp 4 D.For.Unpleas.Nov \
-stim_file 5 ${name}.ref.decon"[4]" -stim_label 5 D.Pleas.Rep \
-stim_maxlag 5 9 -iresp 5 D.Pleas.Rep \
-stim_file 6 ${name}.ref.decon"[5]" -stim_label 6 D.Unpleas.Rep \
-stim_maxlag 6 9 -iresp 6 D.Unpleas.Rep \
-stim_file 7 ${name}.ref.decon"[6]" -stim_label 7 D.Scrambled \
-stim_maxlag 7 9 -iresp 7 D.Scrambled \
-stim_file 8 ${name}.ref.decon"[7]" -stim_label 8 S.Rem.Pleas.Nov \
-stim_maxlag 8 9 -iresp 8 S.Rem.Pleas.Nov \
-stim_file 9 ${name}.ref.decon"[8]" -stim_label 9 S.For.Pleas.Nov \
-stim_maxlag 9 9 -iresp 9 S.For.Pleas.Nov \
-stim_file 10 ${name}.ref.decon"[9]" -stim_label 10 S.Rem.Unpleas.Nov \
-stim_maxlag 10 9 -iresp 10 S.Rem.Unpleas.Nov \
-stim_file 11 ${name}.ref.decon"[10]" -stim_label 11 S.For.Unpleas.Nov \
-stim_maxlag 11 9 -iresp 11 S.For.Unpleas.Nov \
-stim_file 12 ${name}.ref.decon"[11]" -stim_label 12 S.Pleas.Rep \
-stim_maxlag 12 9 -iresp 12 S.Pleas.Rep \
-stim_file 13 ${name}.ref.decon"[12]" -stim_label 13 S.Unpleas.Rep \
-stim_maxlag 13 9 -iresp 13 S.Unpleas.Rep \
-stim_file 14 ${name}.ref.decon"[13]" -stim_label 14 S.Scrambled \
-stim_maxlag 14 9 -iresp 14 S.Scrambled \
-stim_file 15 $name.motion"[0]" -stim_base 15 -stim_label 15 Roll \
-stim_file 16 $name.motion"[1]" -stim_base 16 -stim_label 16 Pitch \
-stim_file 17 $name.motion"[2]" -stim_base 17 -stim_label 17 Yaw \
-stim_file 18 $name.motion"[3]" -stim_base 18 -stim_label 18 dS \
-stim_file 19 $name.motion"[4]" -stim_base 19 -stim_label 19 dL \
-stim_file 20 $name.motion"[5]" -stim_base 20 -stim_label 20 dP \
-svd \
-polort 2 \
-tshift \
-fout \
-tout \
-nocout \
-full_first \
-num_glt 13 \
-glt 1 2Rep-Nov \
-glt_label 1 2Nov-Rep \
-glt 1 2Deep-Shallow \
-glt_label 2 2Deep-Shallow \
-glt 1 2Deep-SHallow.N \
-glt_label 3 2Deep-Shallow.N \
-glt 1 2P-UP.N \
-glt_label 4 2P-UP.N \
-glt 1 2Deep.P-UP.N \
-glt_label 5 2Deep.P-UP.N \
-glt 1 2Shallow.P-UP.N \
-glt_label 6 2Shallow.P-UP.N \
-glt 1 2Rem.For \
-glt_label 7 2Rem.For \
-glt 1 2Deep.Rem-For \
-glt_label 8 2Deep.Rem-For \
-glt 1 2Shallow.Rem-For \
-glt_label 9 2Shallow.Rem-For \
-glt 1 2DRP-DRUP \
-glt_label 10 2DRP-DRUP \
-glt 1 2SRP.SRUP \
-glt_label 11 2SRP.SRUP \
-glt 1 2DRP.SRP \
-glt_label 12 2DRP.SRP \
-glt 1 2DRUP.SRUP \
-glt_label 13 2DRUP.SRUP \
-xsave \
-cbucket $name.cbucket \
-bucket ${name}.decon.affective


3dTcat D.Rem.Pleas.Nov+orig'[0..11]' D.For.Pleas.Nov+orig'[0..11]' D.Rem.Unpleas.Nov+orig'[0..11]' D.For.Unpleas.Nov+orig'[0..11]' D.Pleas.Rep+orig'[0..11]'\
D.Unpleas.Rep+orig'[0..11]' D.Scrambled+orig'[0..11]' -prefix DEEP.TS

3dTcat S.Rem.Pleas.Nov+orig'[0..11]' S.For.Pleas.Nov+orig'[0..11]' S.Rem.Unpleas.Nov+orig'[0..11]' S.For.Unpleas.Nov+orig'[0..11]' S.Pleas.Rep+orig'[0..11]'\
S.Unpleas.Rep+orig'[0..11]' S.Scrambled+orig'[0..11]' -prefix SHALLOW.TS

Subject Author Posted

does the -cbucket overwrite the -bucket command?

Kara Lindstrom August 06, 2004 01:00PM

Re: does the -cbucket overwrite the -bucket command?

Robert Cox August 06, 2004 01:21PM

Re: does the -cbucket overwrite the -bucket command?

Kara Lindstrom August 06, 2004 02:41PM

-cbucket bug fixed

Robert Cox August 09, 2004 11:16AM