AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 31, 2004 04:26PM
Howdy,

I'm having trouble with the new -gltsym option. The following:

-gltsym 'SYM: +pa.obs[[0..10]] -fa.obs[[0..10]]' -glt_label 1 pa-fa.obs \

yields this error:

"** ERROR: sub-brick index 10 is out of range 0..9"

and the following matrix:

"GLT matrix from 'SYM: +pa.imit[[0..10]] +fa.imit[[0..10]] -tha.imit[[0..10]] -ta.imit[[0..10]]':
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 0 0 0 0 0 0 0 0"

I had expected the matrix to have 11 rows (for a maxlag of 11) and a 1 and -1 in each row based on the example given @ [afni.nimh.nih.gov].

I noticed that, for example:

-gltsym 'SYM: +pa.obs[[0]] -fa.obs[[0]] \ +pa.obs[[1]] -fa.obs[[1]]' -glt_label 1 pa-fa.obs \

would actually make the hoped for matrix if we actually wrote the whole thing out but this would be a lot of work.... Did we not use the right format at first?

Thanks mucho,
Jeremy
Subject Author Posted

help with "-gltsym" option...

Jeremy Skipper August 31, 2004 04:26PM

Re: help with "-gltsym" option...

Jeremy Skipper August 31, 2004 04:41PM

Re: help with "-gltsym" option...

bob cox August 31, 2004 10:09PM