AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 13, 2004 12:53PM

hi ziad,

i read an old post of your about creating an average surface to use as underlay for group maps etc. i followed this procedure, but the average inflated surface has been brutally smoothed and has lost most of its interetsing convexity.

i went to each subject and converted surfaces with:

ConvertSurface -i_fs lh6_std.inflated.asc -o_vec lh6_std.inflated_node.1D lh6_std.inflated_faceset.1D

where lh6 just means that it is the left hemi and i used -rd 6 in mapicosehedron

i then averaged these node files with:

1deval -a "030504js_uw_"$foo"_std.inflated_node.1D[0]" -b "030713sp_"$foo"_std.inflated_node.1D[0]" \
-c "031004mk_uw_"$foo"_std.inflated_node.1D[0]" -d "031009cd_"$foo"_std.inflated_node.1D[0]" \
-e "040314mf_uw_"$foo"_std.inflated_node.1D[0]" -f "040411bwf_uw_"$foo"_std.inflated_node.1D[0]" \
-g "040418ls_uw_"$foo"_std.inflated_node.1D[0]" -h "040829bw_uw_"$foo"_std.inflated_node.1D[0]" \
-i "040829dw_uw_"$foo"_std.inflated_node.1D[0]" -expr '(a+b+c+d+e+f+g+h+i)/9' > cts_"$foo"_std.inflated_node_col1

for each of three dimensions... and compiled a spec file after concatenation with 1dcat and quickspec:

1dcat cts_"$foo"_std.inflated_node_col1 cts_"$foo"_std.inflated_node_col2 \
cts_"$foo"_std.inflated_node_col3 > cts_"$foo"_std.inflated_node.1D

quickspec -tsn 1D inflated cts_"$foo"_std.inflated_node.1D 030713sp_"$foo"_std.inflated_faceset.1D \
-spec cts_"$foo"_std.spec

i used the triangualtion file of one of my suibjects...

there's no external curvature reference right? am i missing something obvious? has this worked for anyone?

thanks! i know this is from some old post, but i'm not sure what got resolved...

vitaly
Subject Author Posted

average surface with suma

vitaly October 13, 2004 12:53PM

Re: average surface with suma

Ziad S. Saad October 13, 2004 11:11PM

Re: average surface with suma

Vitaly Napadow October 14, 2004 09:21AM