AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 09, 2005 11:36AM
The df is essentially the number of points used to estimate the variance. In the ANOVA case, the variance for the denominator df was estimated from all 4 conditions, even though the numerator test only involves 2 conditions with your contrasts. If you do a t-test on pairs of conditions, then only that data goes into the analysis, so you get fewer df.

"Better" is in the context of a model or codified belief about the structure of the data. If you believe that the variance in activation is reasonably considered to be about the same in all conditions, then it is proper to use all conditions to estimate that variance (the 3dANOVA way). If you wish to be conservative, and assume that different conditions may have markedly different activation variances, then you should only use the data needed for the variance estimate (the 3dttest way).

Over to you, Gang!
Subject Author Posted

contrast and dfs

Mike Bello February 09, 2005 11:17AM

Re: contrast and dfs

Robert Cox February 09, 2005 11:36AM

Re: contrast and dfs

Mike Bello February 09, 2005 11:48AM

Re: contrast and dfs

Gang Chen February 09, 2005 11:54AM

Re: contrast and dfs

Mike Bello February 09, 2005 12:00PM

Re: contrast and dfs

Gang Chen February 09, 2005 01:16PM