AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
February 16, 2005 09:16AM
Hi Caitlin,

If you are talking about one subject moving during the scan,
it might be possible to do it with only 3dvolreg. Since that
movement is large, you might need to add the -twopass option
to align all of the EPI data to the beginning of your first run
(time point 2 or 3, say, and assuming that you collected the
anatomical data at the beginning).

I just don't see any mention of 3dvolreg in your posts, so maybe
you have not tried it with the -twopass option.

The HowTo #5 single subject script shows an example of this:
[afni.nimh.nih.gov]

In text: [afni.nimh.nih.gov]

- rick

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Subject Author Posted

3dAnatNudge

Caitlin Newberry February 14, 2005 04:42PM

Re: 3dAnatNudge

Rich Hammett February 14, 2005 11:09PM

Re: 3dAnatNudge

Caitlin Newberry February 15, 2005 09:57AM

Re: 3dAnatNudge

Caitlin Newberry February 15, 2005 12:26PM

Re: 3dAnatNudge

Rich Hammett February 15, 2005 11:28PM

Re: 3dAnatNudge

rick reynolds February 16, 2005 09:16AM