Rich Hammett wrote:
> Have you tried to3d the usual way?
Thing is, I don't know the syntax, given that there are a million DICOM files.
I never had to learn the syntax for to3d for I-files because I used Imon or whatever.
> I know that John Ostuni wrote scripts to convert the files to
> several formats, including AFNI. I'd recommend using his
> setup as it's been working consistently from what I've heard.
> He uses to3d for the conversion step.
That's the crux of the problem. His scripts have a bug right now that gets orientation wrong. So I wanted to do it in AFNI directly.
> rich