AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 06, 2005 07:46PM
I love the way the maxima plugin now automatically numbers regions, but I'm a little confused about how the weighted average option for dealing with neighboring extrema works. These are the 17 maxima I obtained:

RAI mm coordinates:

( -17.00 33.00 30.00) : val = 2.730000
( -32.00 57.00 14.00) : val = 4.440000
( 27.00 47.00 33.00) : val = 2.950000
( -21.00 -43.00 14.00) : val = 2.850000
( 52.00 23.00 -3.00) : val = 2.030000
( -45.00 27.00 35.00) : val = 6.180000
( -22.00 -24.00 11.00) : val = 15.980000
( 43.00 -27.00 19.00) : val = 4.060000
( 11.00 31.00 24.00) : val = 1.740000
( 23.00 63.00 7.00) : val = 13.770000
( -42.00 48.00 0.00) : val = 12.220000
( 25.00 16.00 49.00) : val = 0.820000
( -18.00 8.00 49.00) : val = 11.870000
( -53.00 35.00 49.00) : val = 11.860000
( 24.00 65.00 42.00) : val = 11.780000
( -19.00 14.00 28.00) : val = 11.630000
( -13.00 8.00 -3.00) : val = 10.960000

number of extrema = 17

I was initially confused by values that were well below my threshold, but since the weighted average option may assign the local maximum to a voxel that isn't as intensely activated as the maxima surrounding it, I think I understand this now. My question is about how these are ranked in cases where extrema are clustered. Is it based on the most intense extreme within the cluster, or do all the extrema within the cluster impact the ranking? Would it be possible to list the values that determine the ranking rather than the value of the actual center of the cluster?

While we're at it, what are the advantages and disadvantages of "nearest neighbor" vs. "weighted average"?
Subject Author Posted

"weighted average" option with maxima plugin

Phil Burton March 06, 2005 07:46PM

Re: "weighted average" option with maxima plugin

rick reynolds March 07, 2005 05:16PM

Re: "weighted average" option with maxima plugin

Robert Cox March 07, 2005 05:20PM

Re: "weighted average" option with maxima plugin

Phil Burton March 07, 2005 05:58PM

Re: "weighted average" option with maxima plugin

rick reynolds March 08, 2005 10:29AM