AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 16, 2005 08:22PM
If it is not possible, is there a way to know the count of outliers for each timepoint, and the value of 'median + 3.5*MAD'?

Sure, "3dToutcount -range fred+orig | head".

That will show you the top 10 lines of output. But the
"3dToutcount -range fred+orig" command gives you exactly
the information that you are asking for, if you do not
plot it with 1dplot.

If you just want to note which TRs have the outlier count
exceeding the MAD line, then you could use 'awk':

3dToutcount -range fred+orig | awk '{if ( $1 > $2 ) print NR-1, $1}'

Note that this is going to give you lots of numbers, and
you may not care about any of them, even if they are large.
Your best guide to search for problems is to use your eyes,
scanning the time-series with afni.

- rick

Subject Author Posted

3dToutcount

Kazu August 16, 2005 05:16PM

Re: 3dToutcount

rick reynolds August 16, 2005 05:20PM

Re: 3dToutcount

Kazu August 16, 2005 05:34PM

Re: 3dToutcount

rick reynolds August 16, 2005 06:04PM

Re: 3dToutcount

Kazu August 16, 2005 06:35PM

Re: 3dToutcount

rick reynolds August 16, 2005 08:22PM

Re: 3dToutcount

Kazu August 17, 2005 09:14AM