AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 22, 2005 10:41AM
Assume there is only one run of data in your analysis. Some suggestions:

> -polort 3

Cubic fitting might be an overkill. In most cases quadratic fitting is good enough.

> TENT(0, 15, 6)

If 15 seconds of hrf turns out to be too long, it could be shortened to something like TENT(0, 12, 5).

> -stim_file 3 sj01.motion.1D \[0\] -stim_label 3 "Roll" \
> -stim_file 4 sj01.motion.1D \[1\] -stim_label 4 "Pitch" \
> -stim_file 5 sj01.motion.1D \[2\] -stim_label 5 "Yaw" \
> -stim_file 6 sj01.motion.1D \[3\] -stim_label 6 "DS" \
> -stim_file 7 sj01.motion.1D \[4\] -stim_label 7 "DL" \
> -stim_file 8 sj01.motion.1D \[5\] -stim_label 8 "DP" \


It is better to use -stim_base so that those 6 motion parameters would be included as part of the baseline, and the full F value would be an indicator for regressors of interest only.

The 6 files should be inserted like

'sj01.motion.1D[0]'

> -glt 1 ../A_act_vs_con.txt -glt_label 1 'act-con' \
> -glt 1 ../A_act.txt -glt_label 1 'act' \
> -glt 1 ../A_con.txt -glt_label 1 'con' \


Change to

-glt 1 ../A_act_vs_con.txt -glt_label 1 'act-con' \
-glt 1 ../A_act.txt -glt_label 2 'act' \
-glt 1 ../A_con.txt -glt_label 3 'con' \

Gang
Subject Author Posted

3dDeconvolve, TENT function

Sukkyoon An November 22, 2005 06:40AM

Re: 3dDeconvolve, TENT function

Gang Chen November 22, 2005 10:41AM