AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 02, 2006 12:11PM
Thanks, Tom, for your answer.

The datasets do not overlay properly, even in the +orig view. I selected the extreme points further from the skull and in the actual brain, but the result is still the same. Here's a more detailed description of what I'm doing:

All anatomical and functional files are in the same folder. I run the to3d command like this:

to3d -time:zt 124 1 1s seq+z '3D:-1:0:256:256:1:filename'

You were saying "THE MOST LIKELY PROBLEM IS THAT VOXEL DIMENSIONS OR FOV WERE MISENTERED AT THE TO3D STEP." Is there something I'm missing in the above command line to distinguish the FOV?

It seems to me that the functional dataset does not transform with the anatomical set when I do the Talairach transformation. Even after I write the functional BRIK and HEADER to disk, the functional overlay gives me a narrow band of activation, as if the FOV of the anatomical underlay and the FOV of the functional overlay do not match, when really they should be stretched to fit one another. Any suggestions?

Thanks,
Dmitry
Subject Author Posted

Distorted Overlay after Talairach Conversion

Dmitry January 26, 2006 10:50AM

Re: Distorted Overlay after Talairach Conversion

Dmitry January 30, 2006 11:33AM

Re: Distorted Overlay after Talairach Conversion

Tom January 30, 2006 01:09PM

Re: Distorted Overlay after Talairach Conversion

Dmitry February 02, 2006 12:11PM

Re: Distorted Overlay after Talairach Conversion

Tom February 02, 2006 01:14PM

Re: Distorted Overlay after Talairach Conversion

Dmitry February 02, 2006 02:40PM

Re: Distorted Overlay after Talairach Conversion

Tom February 03, 2006 09:02AM