Hi AFNI experts,

I'm trying to convert dicom images into afni format. For the functional images, this is no problem -- I just point to3d to the relevant files, and it opens them without any trouble. It figures out that the scans were acquired in an interleaved order and everything. But for the structural scans, it has problems. For these scans, to3d doesn't interleave the images, so I end up with a volume that has all the odd slices (1, 3, 5, etc) first, and then all the even slices (2, 4, 6, etc) -- basically, two short brains stacked one on top of the other.

I've tried using -sinter (despite the fact that they're not .ima files), and I've tried to trick it into believing that it was a timeseries with one time-step (so I could tell it that they were were altplus), but to3d is too clever for such simple tricks. Any ideas on what I'm doing wrong?

Thanks!

Glenn.