AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 27, 2006 10:59AM
> Related to Susan's question, how you would recommend setting
> the minlag and maxlag for variable stimuli? If the videos vary from
> 2 TR to 6 TR, what would help to increase the specificity of the
> sampling of the response? Would it make sense to limit the
> sampling period to a smaller window -- say from 4-8 sec
> post-stimulus rather than 2-10 sec (what they currently have)?


The rule of thumb about minlag and maxlag is (maxlag - minlag) x TR covers the duration of the impulse response function of each event. With TR = 2 and minlag = 0, you can set up maxlag = 6 or 7. Since the specification is about the impulse response function (not the hemodynamic response function for the whole event), the length of each clip in this context is irrelevant unless you suspect the brain may respond differently with longer stimuli.

> Also, since the long stimuli are more like blocks and the short
> stimuli are more like events, is it acceptable to do two analyses --
> one for the long videos using a block design and one for the short
> videos using an event-related design? Or would that undercut
> validity since responses to the short and long videos overlap?


Sure, you can model long and short stimuli of same type separately if you want to see if they have different response. Overlapping across videos should not be a problem since it is the goal of the analysis to tear apart different causes from the scanner readout.

Gang
Subject Author Posted

variable stimuli

Susan Wagner Cook March 23, 2006 01:00PM

Re: variable stimuli

Gang Chen March 24, 2006 02:51PM

Re: variable stimuli

Susan Wagner Cook March 24, 2006 05:53PM

Re: variable stimuli

joan fisher March 26, 2006 10:30AM

Re: variable stimuli

Gang Chen March 27, 2006 10:59AM

Re: variable stimuli

Gang Chen March 27, 2006 10:37AM

Re: variable stimuli

Susan Wagner Cook March 27, 2006 02:51PM

Re: variable stimuli

Gang Chen March 27, 2006 04:22PM

Re: variable stimuli

Susan Wagner Cook March 27, 2006 04:45PM