Hi! I'm trying to run 3dDeconvolve with the latest version of afni (just updated from the 8/25/2005 version), and while this command previously worked (under the older version), it no longer does. The command lines and error are as below:
3dDeconvolve -input run_1+orig -nfirst 0 -polort 2 \
> -num_stimts 2 -basis_normall 1 \
> -stim_times 1 407hum_corr.1D 'GAM' \
> -stim_label 1 HumCorrect \
> -stim_times 2 407hum_incorr.1D 'GAM' \
> -stim_label 2 HumIncorrect \
> -num_glt 2 \
> -glt_label 1 HumCorrect_HumIncorrect_diff \
> -gltsym 'SYM: +HumCorrect -HumIncorrect' \
> -glt_label 2 HumCorrect_HumIncorrect_ave \
> -gltsym 'SYM: +0.5*HumCorrect +0.5*HumIncorrect' \
> -fitts fit_ts -errts error_ts \
> -xjpeg glm_matrix.jpg -tout -fout -bucket glm_out_Hum_corr_incorr
Program: 3dDeconvolve
Author: B. Douglas Ward
Initial Release: 02 Sept 1998
Latest Revision: 29 Jan 2002
3dDeconvolve Error: Unrecognized command line option: -basis_normall
With the -basis_normall 1, I am trying to make it so that the model time series for each stimulus condition should be normalized to have a peak amplitude of 1. I didn't see this option under 3dDeconvolve -help; is this option no longer available or am I doing something wrong (quite probable)?
Thanks in advance for any help!
Laura