AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 24, 2006 12:55PM
I'm trying to use AFNI tools to run psychophysiological interaction analyses, and I have a question about how to carry out one particular step in that process. I'm trying to deconvolve a hemodynamic response function from a time series to arrive at what amounts to an item-response function for stimuli onsets. The easiest way for me to illustrate what I'm trying to do may be to make reference to the deconvolution example in the latest 3dDeconvolve documentation, example 1.4.2.1. In this example there's a simulated time series created by convolving an IRF with and HRF:

The IRF: F(t) = [0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0]

The HRF: H(t) = [0 5 10 5 2]

The resulting simulated time series (with a constant and slope added):

z(t) = [100 101 102 108 114 110 108 107 108 114 120 116 114 113 114 120 126 122 120 119]

Example 1.4.2.1 shows how to deconvolve F(t) from z(t) to get H(t), the original hemodynamic response function. My question: is there any way using AFNI tools to take z(t) and H(t) and recreate the original IRF, F(T)? If so, what's the command line syntax to do it?

Thanks,

John Herrington
Subject Author Posted

using 3dDeconvolve to get an IRF

John Herrington May 24, 2006 12:55PM

Re: using 3dDeconvolve to get an IRF

Gang Chen May 24, 2006 05:15PM

Re: using 3dDeconvolve to get an IRF

John Herrington May 24, 2006 07:33PM

Re: using 3dDeconvolve to get an IRF

Gang Chen May 25, 2006 10:45AM

Re: using 3dDeconvolve to get an IRF

John Herrington May 28, 2006 11:35AM

Re: using 3dDeconvolve to get an IRF

Gang Chen May 30, 2006 11:18AM