AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
Colm Connolly
August 14, 2007 09:15AM
bob cox wrote:

[afni.nimh.nih.gov]:
>
> (1) create the mean EPI volume with 3dTstat
> (2) register that to the anatomical with 3dAllineate, saving
> the transformation matrix with -1Dmatrix_save
> (3) use 3dvolreg to register the EPI time series within itself,
> using -1Dmatrix_save to save the transformation matrices and
> using -prefix NULL to suppress output.
> (4) combine the matrices from 2 and 3 with cat_matvec
> (5) use 3dAllineate -1Dmatrix_apply to apply the combined
> matrices to the original EPI time series dataset to produce the
> registered volume.

In the case of multiple runs would you add this?
(0) concatenate all runs

Thanks,

Colm.
Subject Author Posted

3dAllineate, matrix concatentation

Brad Buchsbaum April 06, 2007 07:18PM

Re: 3dAllineate, matrix concatentation

ziad April 09, 2007 10:20AM

Re: 3dAllineate, matrix concatentation

Brad Buchsbaum April 10, 2007 01:56PM

Re: 3dAllineate, matrix concatentation

ziad April 10, 2007 03:34PM

Re: 3dAllineate, matrix concatentation

Brad Buchsbaum April 10, 2007 04:03PM

Re: 3dAllineate, matrix concatentation

Brad Buchsbaum April 10, 2007 05:42PM

Re: 3dAllineate, matrix concatentation

ziad April 12, 2007 09:54AM

Re: 3dAllineate, matrix concatentation

Walther July 19, 2007 04:35PM

Re: 3dAllineate, matrix concatentation

bob cox July 23, 2007 09:21AM

Re: 3dAllineate, matrix concatentation

bob cox July 27, 2007 02:21PM

Re: 3dAllineate, matrix concatentation

Walther August 09, 2007 10:20PM

Re: 3dAllineate and EPI

bob cox August 10, 2007 08:48AM

Re: 3dAllineate and EPI

bob cox August 10, 2007 09:05AM

Re: 3dAllineate and EPI

Colm Connolly August 14, 2007 09:15AM

Re: 3dAllineate and EPI

bob cox August 14, 2007 09:49AM

Re: 3dAllineate and EPI

Colm Connolly August 16, 2007 07:15AM

Re: 3dAllineate and EPI

bob cox August 21, 2007 11:47AM