AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Jim Bjork
April 16, 2007 04:18PM
Dear AFNI minds,

I would like to use 3dDeconvolve to calculate datasets of hemodynamic response functions to particular event classes as I would get with the -stim_lag 7 option (eight total time-points, 0-7) and a single column of 0's and 1's where the events are.

Problem is, my behavioral data are collected as stim times (in s). I did this because I know you can enter stim_times in AFNI and generate canonical wave-forms on the fly with "GAM" to simply look at event-related correlations in the time series, and contast them.

I am wondering if there is a way to convert stim-times to a column of 0's and 1's (or the equivalent) to enable -iresp output (after feeding afni the TR value) without my having to laboriously concoct a spreadsheet with logic cells.

Jim B
Subject Author Posted

Calculating HRF with -iresp when entering -tstim data

Jim Bjork April 16, 2007 04:18PM

Re: Calculating HRF with -iresp when entering -tstim data

rick reynolds April 16, 2007 04:29PM

Re: Calculating HRF with -iresp when entering -tstim data

Colm Connolly April 17, 2007 07:03AM

Re: Calculating HRF with -iresp when entering -tstim data

Drew April 17, 2007 02:25PM

Re: Calculating HRF with -iresp when entering -tstim data

Jim Bjork April 17, 2007 02:40PM

Re: Calculating HRF with -iresp when entering -tstim data

Sideris May 13, 2007 11:57AM

Re: Calculating HRF with -iresp when entering -tstim data

Gang Chen May 14, 2007 12:22PM

Additional question Re: Calculating HRF with -iresp when entering -tstim data

L September 12, 2007 09:20AM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

rick reynolds September 12, 2007 12:27PM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

L September 12, 2007 01:07PM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

rick reynolds September 12, 2007 02:34PM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

Liat September 12, 2007 02:58PM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

rick reynolds September 12, 2007 05:48PM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

L September 13, 2007 09:12AM

Re: Additional question Re: Calculating HRF with -iresp when entering -tstim dat

rick reynolds September 13, 2007 09:35AM

Re: PSC and BCoeff

Liat September 13, 2007 10:30AM

Re: PSC and BCoeff

rick reynolds September 13, 2007 10:56AM