AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
Erin
August 27, 2007 08:40AM
Hi,

Thank you for your help. I am using a TENT (0,14,8) function, and I do have a run with only one stimulus in a class at 374 seconds (each stimulus type is 4.25s long), and each run lasts 440s. Is this the situations you are referring to?

If so, with respect to your suggestion, is it correct that the stim_base option is incompatible with the stim_times option? Maybe I do not quite understand the theory behind your suggestion - how do I togethe use the -stim_base option and the BLOCK function while specifying the time point for that stimulus?

Maybe it will help for me to post my script...

And sorry it has taken me so long to respond. I was very lucky and got to take a week vacation.

Thanks again.

3dDeconvolve \
-input scaled_allruns+orig \
-mask mask_retrievalruns+orig \
-polort 3 \
-concat '1D: 0 222 444' \
-CENSORTR *:0-5 \
-nfirst 5 \
-num_stimts 9 \
-stim_times 1 stim/stim_times.01.1D 'TENT(0, 14, 8)' \
-stim_label 1 RFACE \
-stim_times 2 stim/stim_times.02.1D 'TENT(0, 14, 8)' \
-stim_label 2 RSCR \
-stim_times 3 stim/stim_times.03.1D 'TENT(0, 14, 8)' \
-stim_label 3 RNEW \
-stim_times 4 stim/stim_times.04.1D 'TENT(0, 14, 8)' \
-stim_label 4 KFACE \
-stim_times 5 stim/stim_times.05.1D 'TENT(0, 14, 8)' \
-stim_label 5 KSCR \
-stim_times 6 stim/stim_times.06.1D 'TENT(0, 14, 8)' \
-stim_label 6 KNEW \
-stim_times 7 stim/stim_times.07.1D 'TENT(0, 14, 8)' \
-stim_label 7 NFACE \
-stim_times 8 stim/stim_times.08.1D 'TENT(0, 14, 8)' \
-stim_label 8 NSCR \
-stim_times 9 stim/stim_times.09.1D 'TENT(0, 14, 8)' \
-stim_label 9 NNEW \
-iresp 1 irf_RFACE.irf -iresp 2 irf_RSCR.irf \
-iresp 3 irf_RNEW.irf -iresp 4 irf_KFACE.irf \
-iresp 5 irf_KSCR.irf -iresp 6 irf_KNEW.irf \
-iresp 7 irf_NFACE.irf -iresp 8 irf_NSCR.irf \
-iresp 9 irf_NNEW.irf \
-gltsym glt/glt1.txt -glt_label 1 RvK \
-gltsym glt/glt2.txt -glt_label 2 OvN \
-fitts full_model.fit \
-errts residual_error.fit \
-fout -tout -rout \
-x1D Xmat.x1D \
-bucket ret_decon_results
Subject Author Posted

collinearity problem - please explain

Erin August 15, 2007 02:10PM

Re: collinearity problem - please explain

Ziad August 15, 2007 04:36PM

Re: collinearity problem - please explain

Erin August 16, 2007 11:59AM

Re: collinearity problem - please explain

bob cox August 16, 2007 12:15PM

Re: collinearity problem - please explain

Erin August 16, 2007 12:38PM

Re: collinearity problem - please explain

bob cox August 16, 2007 02:54PM

Re: collinearity problem - please explain

Erin August 27, 2007 08:40AM