AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
August 27, 2007 12:02PM
Sorry, there is no functionality like that for mask selection, but there are some alternatives. First you could parse the output of what you've already done with 1dcat and column selectors (that can skip columns). The skipping of sub-bricks in 3D+t datasets and columns or rows in 1D files is described in the help for 3dcalc and 1dcat.

3dmaskave can take a mask range, but it still has to be consecutive values and that would also require juggling of the mask values. You could keep all your masks in separate sub-bricks and then combine selected values into a single sub-brick volume.

I would probably stick with a 3dcalc combination of the ROIs you want in a temporary dataset. This could be done in an in-line 3dcalc command inside the 3dROIstats command. It's a bit more difficult to read, but it should work. This method is given as an example in the Misc. Utilities (Jewel Box) presentation.

afni.nimh.nih.gov/pub/dist/edu/latest/afni12_miscutil
Subject Author Posted

Mak Value Selection Syntax

Ariel August 27, 2007 10:28AM

Re: Mak Value Selection Syntax

Daniel Glen August 27, 2007 12:02PM

Re: Mak Value Selection Syntax

Ariel August 27, 2007 12:28PM