AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Ziad
September 14, 2007 03:47PM
Ciao Cristina,

>
> I'm dealing with subjects that tend to produce large, frequent
> movents in all planes. They also have very tiny heads.
Nice setup, try giving them some wine before they go in the scanner.

> So far, I have decided which datapoints were unusable based on
> visual inspection of each run and the output of 3dVolreg, and
> censored them while running 3dDeconvolve.
That is OK. I am assuming you're also including the parameters from 3dVolreg as regressors of no interest.

>
> Getting rid of those datapoints (I mean, physically eliminating
> them from my bricks) would be a total nightmare and also
> methodologically incorrect, as I understand.
Very very bad idea. Do not do this.
>
> I was wondering though if it would be a good idea to replace
> the nightmarish subbricks with something like a non-offensive
> datapoint, or a mean image of some sort. The plugged-in images
> would still be ignored in Deconvolve. Do you see any advantages
> in following this procedure? How would I go about it?
Why do you want to do that? You don't need to put fake data in there. If you are censoring these points then you don't need to worry about their value in the analysis.

If these censored points look like spikes AND they are caused by motion AND you just want to make the time series look pretty for display purposes, then you can use 3dDespike which would do something along the lines of what you were thinking of. In your analysis this action is a matter of style, which might count for a lot when you work in Milano.

>
> thank you so much for your great work
>
> cristina
>
cheers,
z
Subject Author Posted

sporadic movement: censor or replace?

cristina September 14, 2007 10:09AM

Re: sporadic movement: censor or replace?

Ziad September 14, 2007 03:47PM

Re: sporadic movement: censor or replace?

cristina September 17, 2007 05:54AM

Re: sporadic movement: censor or replace?

AFNI September 17, 2007 08:47AM