AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 04, 2007 10:54AM
Thanks Bob and all you wonderful afni folks.

There are many ways to skin this cat.

I have the means I need now.

How about a boot camp just on 3dcalc?

Wild horses could not keep me away.

So, now some philosophy (or substance):

Lets imagine I have 5 datasets from 5 people doing the same task.
The datasets are in percent change units.
I have individually masked each subject's data for statistically significant activation.

So subjects either have an estimate of percent signal change or 0.0 for each voxel.

What is the right thing to do when averaging?
Perhaps the zeros should be included in the average -- you are assuming that subjects with a 0.0 had no signal in that voxel.

Or perhaps the zeros should not be included in the average -- maybe you want an average of activated voxels, and maybe you think that setting a non-significant voxel to 0.0 is unreasonable.

In my current case, it made a huge difference.
I wonder how many people think of this distinction when publishing their results -- my guess: not many.

Lee

Subject Author Posted

voxels with 0.0 for 3dMean/3dcalc

Lee Friedman October 03, 2007 10:33AM

Re: voxels with 0.0 for 3dMean/3dcalc

rick reynolds October 03, 2007 10:50AM

Re: voxels with 0.0 for 3dMean/3dcalc

Lee Friedman October 03, 2007 11:15AM

Re: voxels with 0.0 for 3dMean/3dcalc

Daniel Glen October 03, 2007 05:47PM

Re: voxels with 0.0 for 3dMean/3dcalc

Lee Friedman October 03, 2007 07:20PM

Re: auto-catenation of datasets

bob cox October 04, 2007 09:42AM

getting philosophical

Lee Friedman October 04, 2007 10:54AM

Re: getting philosophical

Tom Johnstone October 04, 2007 11:35AM

Re: getting philosophical

Jatin October 07, 2007 11:55AM