AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 09, 2007 01:21PM
Hello AFNI Rock Stars! I'm back and better than ever on the Message Board.

I've got a question about resampling, as part of my endeavor to run AlphaSim on my control group results.
On Gang's webpage, he suggested resampling both the Group Mask and the Standard Deviation to original voxel size. But, since I blurred my maps by 6mm, I am converting them to 6 x 6 x 6. I used the following scripts to achieve both steps:

For Group Mask:
3dresample -dxyz 6 6 6 -rmode 'NN' -inset Full_Mask_Controls+tlrc -prefix ControlsMask

For Standard Deviation:
3dresample -dxyz 6 6 6 -rmode 'NN' -inset StdDev+tlrc -prefix StdDev_Resampled

Now my problem is that I can't seem to obtain the spatial correlation with 3dFWHM. When I ran this script:

3dFWHMx -dset StdDev_Resampled+tlrc -mask Full_Mask_Controls+tlrc -out StdDev_fwhm.txt

I got this error message:
"** FATAL ERROR: -mask dataset grid doesn't match input dataset"

HUH??? Help please! Thank you!

Yours in familywise solidarity,
Whitney
Subject Author Posted

Resampling error?

Whitney Postman October 09, 2007 01:21PM

Re: Resampling error?

Gang Chen October 09, 2007 01:29PM

Re: Resampling error?

Whitney Postman October 09, 2007 01:36PM

Re: Resampling error?

Gang Chen October 09, 2007 01:41PM

Re: Resampling error?

Whitney Postman October 09, 2007 01:45PM

Re: Resampling error?

Daniel Glen October 09, 2007 02:13PM

Re: Resampling error?

Gang Chen October 09, 2007 02:15PM

Re: Resampling error?

Whitney Postman October 09, 2007 03:15PM