AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 10, 2007 10:21AM

Can I check if it is oblique or not?

Coz all the EPI were acquired in axial direction.
and I checked the EPIs with mri_info or avwhd, the primary slice direction is AXIAL, so I thought that they were all acquired in cardinal direction.


jackie% mri_info run1.nii
Volume information for run1.nii
type: nii
dimensions: 64 x 64 x 26 x 512
voxel sizes: 4.0000, 4.0000, 4.6000
type: SHORT (4)
fov: 64.000
dof: 0
xstart: -32.0, xend: 32.0
ystart: -32.0, yend: 32.0
zstart: -13.0, zend: 13.0
TR: 2500.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees
nframes: 512
ras xform present
xform info: x_r = -1.0000, y_r = -0.0000, z_r = -0.0000, c_r = 0.0000
: x_a = -0.0000, y_a = -0.9893, z_a = -0.1461, c_a = 9.1555
: x_s = 0.0000, y_s = -0.1461, z_s = 0.9893, c_s = 18.5465
Orientation : LPS
Primary Slice Direction: axial

voxel to ras transform:
-4.0000 -0.0000 -0.0000 128.0000
-0.0000 -3.9571 -0.6720 144.5182
0.0000 -0.5843 4.5507 -21.9133
0.0000 0.0000 0.0000 1.0000

voxel-to-ras determinant 73.6

ras to voxel transform:
-0.2500 0.0000 0.0000 32.0000
0.0000 -0.2473 -0.0365 34.9417
-0.0000 -0.0318 0.2151 9.3022
0.0000 0.0000 0.0000 1.0000
Subject Author Posted

qform & sform problem

jackie yang October 10, 2007 07:16AM

Re: qform & sform problem

Daniel Glen October 10, 2007 08:13AM

Re: qform & sform problem

jackie yang October 10, 2007 10:21AM

Re: qform & sform problem

rick reynolds October 10, 2007 12:09PM

Re: qform & sform problem

jackie yang October 10, 2007 12:24PM

Re: qform & sform problem

rick reynolds October 10, 2007 12:54PM

Re: qform & sform problem

jackie yang October 10, 2007 02:12PM

Re: qform & sform problem

rick reynolds October 10, 2007 02:42PM

Re: qform & sform problem

jackie yang October 10, 2007 04:53PM

Re: qform & sform problem

rick reynolds October 10, 2007 05:15PM

Re: qform & sform problem

jackie yang October 11, 2007 07:37AM

Re: qform & sform problem

rick reynolds October 11, 2007 08:17AM

Re: qform & sform problem

jackie yang October 11, 2007 09:50AM

Re: qform & sform problem

rick reynolds October 11, 2007 02:46PM