AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ziad
January 21, 2008 09:47PM
No it is OK.
If you have anatomicals from these subjects but from different scan sessions, you can align the EPI (assuming they cover a decent chunk of the brain) to the anatomicals from a different session. 3dAllineate would do this registration.
Alternately, you can take those EPI directly to TLRC space with @auto_tlrc and use the average EPI template. Of course. it would be best if all your data from the same study are aligned to tlrc in the same manner.
Note that we are improving a set of tools to better align EPI to T1 (whole head). So if you have trouble with the alignment, send us the data.

cheers,
ziad
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Subject Author Posted

EPI slices without a T1

Deborah January 21, 2008 03:00PM

Re: EPI slices without a T1

ziad January 21, 2008 09:47PM