AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 12, 2008 01:38PM
Dear AFNI expert,

I collected 7-min resting-state fMRI data, and I would like to look at some functional connectivity.

I am using Gang Chen’s guide [afni.nimh.nih.gov]

Before I run “3dSynthesize”, I need to run 3dDeconvolve.

With the resting-state fMRI data “RestState+orig” in hand, could you show me how to set up the “3dDeconvolve”?

In the suggested
“3dSynthesize -cbucket CbucketFileFrom3dDeconvolve+orig -matrix x1DFrom3dDeconvolve -select ... prefix EffectsOfNoInterest”

What should I select for the “…” after the “-select” option?

Thank you very much.


-- David

Subject Author Posted

resting state functional connectivity analysis

David Zhu February 12, 2008 01:38PM

Re: resting state functional connectivity analysis

Gang Chen February 12, 2008 02:00PM

Re: resting state functional connectivity analysis

David Zhu February 12, 2008 02:15PM

Re: resting state functional connectivity analysis

Gang Chen February 12, 2008 02:20PM

Re: resting state functional connectivity analysis

David Zhu February 12, 2008 04:26PM

Re: resting state functional connectivity analysis

Gang Chen February 12, 2008 04:48PM

Re: resting state functional connectivity analysis

David Zhu February 18, 2008 12:08PM

Re: resting state functional connectivity analysis

Gang Chen February 19, 2008 10:17AM