AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 26, 2008 03:26PM
Hi Gang -

I'm attempting to run 3dLME on a 2 Response Types X 2 Emotions X 2 Groups ANOVA (plus random subject factor).

I've resampled all the files to 3 X 3 X 3. I'm using input files with only 1 subbrik. None of my factors have only numbers.

Here is my model.txt below. There are more subjects but for brevity I have only included two. When I use all subjects, it takes longer and there are more numbers but the error is the same.

volume
groupANOVA
MASK:
Response*Emotion*Group
COV:
SavedForRandomEffects
GoT-GoC
Go*0*Test-Go*0*Control
NoGoT-NoGoC
NoGo*0*Test-NoGo*0*Control
FearT-FearC
0*Fear*Test-0*Fear*Control
NeutralT-NeutralC
0*Neutral*Test-0*Neutral*Control
FgoT-FgoC
Go*Fear*Test-Go*Fear*Control
FngT-FngC
NoGo*Fear*Test-NoGo*Fear*Control
NgoT-NgoC
Go*Neutral*Test-Go*Neutral*Control
NngT-NngC
NoGo*Neutral*Test-NoGo*Neutral*Control
......
Subj Response Emotion Group InputFile
A11 Go Fear Test /sub_folders/A11/afnicombo/A11_333_Go_Fear_stats+tlrc
A11 NoGo Neutral Test /sub_folders/A11/afnicombo/A11_333_NoGo_Neutral_stats+tlrc
A11 Go Neutral Test /sub_folders/A11/afnicombo/A11_333_Go_Neutral_stats+tlrc
A11 NoGo Fear Test /sub_folders/A11/afnicombo/A11_333_NoGo_Fear_stats+tlrc
A41 Go Fear Control /sub_folders/A41/afnicombo/A41_333_Go_Fear_stats+tlrc
A41 NoGo Neutral Control /sub_folders/A41/afnicombo/A41_333_NoGo_Neutral_stats+tlrc
A41 Go Neutral Control /sub_folders/A41/afnicombo/A41_333_Go_Neutral_stats+tlrc
A41 NoGo Fear Control /sub_folders/A41/afnicombo/A41_333_NoGo_Fear_stats+tlrc
......

I've attached the output file (which was run with 37 subjects) but the main error is:
Error in if (ext == "head") { : argument is of length zero
Calls: read.AFNI
Execution halted

Any help you could give me would be really appreciated. I've tried working on this for a while, with no luck.
Thanks,
Alex

Subject Author Posted

3dLME Error

Alex Millner February 26, 2008 03:26PM

Re: 3dLME Error

Gang Chen February 26, 2008 04:19PM

Re: 3dLME Error

bob cox February 26, 2008 04:22PM

Re: 3dLME Error

Alex Millner February 26, 2008 04:58PM

Re: 3dLME Error

Alex Millner February 27, 2008 12:49PM