We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
How about trying to run 3dSkullStrip in interactive mode? You can stop it before it gets too far into the dura that you do not want.
Relevant options to consider would be: -visual -interactive . Also you'll need to run afni and suma at the same time. See section called 'Eye Candy Mode' in 3dSkullStrip -help