AFNI Nation,
My .cshrc file (in my home directory) features the line...
set path = ( $path /usr/local/bin/afni )
When I echo $path I get...
/usr/lib/qt-3.3/bin /usr/kerberos/bin /usr/lib/ccache /usr/local/bin /bin /usr/bin /usr/X11R6/bin /usr/local/bin/afni /usr/local/bin/afni
After logging in and out, I can't activate AFNI programs from the command line. When I cd into /usr/local/bin/afni, I can definitely see everything there, but even there I can't execute AFNI programs. For example...
[kanevskya@homestar bin]$ pwd
/usr/local/afni/bin
[kanevskya@homestar bin]$ ls 3dcopy
3dcopy
[kanevskya@homestar bin]$ 3dcopy
3dcopy: Command not found.
On the other hand, when I type ./3dcopy within /usr/local/afni/bin I get the help documentation, as expected. Why do I need to flash the programs in order to get them to work and how do I need to edit my .cshrc file in order to obtain greater functionality?
-Ariel
PS - Things seem to work fine in bash, so I'll use that shell for the time being.