AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Ariel
August 07, 2008 09:51AM
AFNI Nation,

My .cshrc file (in my home directory) features the line...

set path = ( $path /usr/local/bin/afni )

When I echo $path I get...

/usr/lib/qt-3.3/bin /usr/kerberos/bin /usr/lib/ccache /usr/local/bin /bin /usr/bin /usr/X11R6/bin /usr/local/bin/afni /usr/local/bin/afni

After logging in and out, I can't activate AFNI programs from the command line. When I cd into /usr/local/bin/afni, I can definitely see everything there, but even there I can't execute AFNI programs. For example...

[kanevskya@homestar bin]$ pwd
/usr/local/afni/bin
[kanevskya@homestar bin]$ ls 3dcopy
3dcopy
[kanevskya@homestar bin]$ 3dcopy
3dcopy: Command not found.

On the other hand, when I type ./3dcopy within /usr/local/afni/bin I get the help documentation, as expected. Why do I need to flash the programs in order to get them to work and how do I need to edit my .cshrc file in order to obtain greater functionality?

-Ariel

PS - Things seem to work fine in bash, so I'll use that shell for the time being.

Subject Author Posted

$path variable in .cshrc and AFNI

Ariel August 07, 2008 09:51AM

Re: $path variable in .cshrc and AFNI

Judd Storrs August 07, 2008 11:39AM

Re: $path variable in .cshrc and AFNI

Ariel Kanevsky August 07, 2008 01:17PM