AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Jan Kalkus
August 14, 2008 02:25PM
Hi,

I'm using 3dVol2Surf on a few subjects for cortical surface analysis. It was recommended to me that I use NIML format for surface data, but I'm having trouble outputting the data in NIML format.

When using the -out_1D option, datasets output fine and are full of data:

# --------------------------------------------------
# surface 'lh.smoothwm.asc', 'ave' :
#
# node 1dindex i j k vals v0 v1 v2 v3 v4 v5 v6 v7 v8 v9 v10 v11 v12 v13 v14 v15 v16 v17 v18 v19 v20 v21 v22 v23 v24 v25 v26 v27 v28 v29 v30 v31 v32 v33 v34 v35 v36 v37 v38 v39 v40 v41 v42 v43 v44 v45 v46 v47 v48 v49 v50 v51 v52 v53 v54 v55 v56 v57 v58 v59 v60 v61 v62 v63 v64 v65 v66 v67 v68 v69 v70 v71 v72 v73 v74 v75 v76 v77 v78 v79 v80 v81 v82 v83 v84 v85 v86 v87 v88 v89 v90 v91 v92 v93 v94 v95 v96 v97 v98 v99
# ------ ------- --- --- --- ---- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- -------- --------
0 10076 28 29 2 4 750.5 765 725.25 805.75 788.75 721.75 774.75 745 743.75 788 778.5 806.25 715.75 730.75 769.75 770.5 755.5 726 776.5 870.5 771.25 797.5 758.5 705.25 682 712 702.75 829.5 803.25 771 776.25 761.5 751.75 727.5 802.25 780.75 733.75 772.25 725.75 712.5 835.25 764.25 698.5 710.5 704.5 745.75...



However, when using the -out_niml option, datasets are filled with gibberish:

<AFNI_dataset
dset_type="Node_Bucket"
self_idcode="XYZ_7GLBCY59Y0EFv2t4MZJzFQ"
domain_parent_idcode
geometry_parent_idcode
filename="bs_rh_r2_vr_surf.niml.dset"
ni_form="ni_group" >
<SPARSE_DATA
ni_form="binary.msbfirst"
ni_type="100*float"
ni_dimen="198812"
data_type="Node_Bucket_data"
ni_timestep="2.4" >D4¿
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Subject Author Posted

3dVol2Surf -out_niml ouputs gibberish

Jan Kalkus August 14, 2008 02:25PM

Re: 3dVol2Surf -out_niml ouputs gibberish

rick reynolds August 14, 2008 02:38PM