AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
October 28, 2008 08:27AM
The automasking is 3dDWItoDT is implemented as an automask of the first sub-brick, a B0 volume. The 3dAutomask program, on the other hand, computes the automask from the median of all sub-bricks in the dataset. To get the same result, you can specify the zeroth sub-brick on the command line.

3dAutomask -prefix dwi_am dwi+orig'[0]'
Subject Author Posted

3dDWItoDT -automask

Sunita Bava October 27, 2008 06:36PM

Re: 3dDWItoDT -automask

Daniel Glen October 28, 2008 08:27AM

Re: 3dDWItoDT -automask

Sunita Bava November 05, 2008 07:05PM