AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Bob Cox
November 10, 2008 04:27PM
When I run the program, I get the output below. (The line starting with % is the command line I used.) If you aren't seeing something like this, then perhaps your AFNI binaries need updating.

% 3dAllineate -base SSanat0101+orig -source SSanat0102+orig -allcostX
++ 3dAllineate: AFNI version=AFNI_2008_07_18_1710 (Nov 10 2008) [32-bit]
++ Authored by: Emperor Zhark
++ Loading datasets
++ Zero-pad: not needed
++ Computing -autobox
++ 3597048 voxels [44.3%] in weight mask
++ Number of points for matching = 1690612
++ Local correlation: blok type = 'RHDD(6.54321)'
*+ WARNING: No output dataset will be calculated
++ ========== sub-brick #0 ==========
+ initial Parameters = 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 1.0000 1.0000 1.0000 0.0000 0.0000 0.0000
++ allcost output: init #0
ls = 0.301248
sp = 0.300433
mi = -0.387601
crM = 0.277303
nmi = 0.938519
je = 5.91662
hel = -0.0747492
crA = 0.526601
crU = 0.528975
lss = 0.698752
lpc = 0.0262987
lpa = 0.973701
++ total CPU time = 6.8 sec
++ ###########################################################

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Subject Author Posted

Comparing two images

siamak November 10, 2008 11:01AM

Re: Comparing two images

Bob Cox November 10, 2008 11:36AM

Re: Comparing two images

siamak November 10, 2008 12:16PM

Re: Comparing two images

Bob Cox November 10, 2008 02:51PM

Re: Comparing two images

siamak November 10, 2008 04:18PM

Re: Comparing two images

Bob Cox November 10, 2008 04:27PM

Re: Comparing two images

siamak November 11, 2008 11:35AM