AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Jatin
November 10, 2008 11:24AM
Sorry, I forgot to include the Deconvolve script:

3dDeconvolve \
-input ${STUDY}${SUBJECTS[$n]}IMPEXP_EMOT_RUN1.zp.spikeShort.tshift.volreg.smooth.scaled.nii \
${STUDY}${SUBJECTS[$n]}IMPEXP_GEND_RUN1.zp.spikeShort.tshift.volreg.smooth.scaled.nii \
${STUDY}${SUBJECTS[$n]}IMPEXP_EMOT_RUN2.zp.spikeShort.tshift.volreg.smooth.scaled.nii \
${STUDY}${SUBJECTS[$n]}IMPEXP_GEND_RUN2.zp.spikeShort.tshift.volreg.smooth.scaled.nii \
-mask ${STUDY}${SUBJECTS[$n]}.Mask.nii \
-polort 4 \
-num_stimts 12 \
-stim_file 1 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Fear_Emot.1D \
-stim_label 1 Fear_Emot \
-stim_file 2 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Happy_Emot.1D \
-stim_label 2 Happy_Emot \
-stim_file 3 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Neutral_Emot.1D \
-stim_label 3 Neutral_Emot \
-stim_file 4 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Fear_Gend.1D \
-stim_label 4 Fear_Gender \
-stim_file 5 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Happy_Gend.1D \
-stim_label 5 Happy_Gender \
-stim_file 6 BehavDat/${STUDY}${SUBJECTS[$n]}IMPEXP.Neutral_Gend.1D \
-stim_label 6 Neutral_Gender \
-stim_file 7 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[1] \
-stim_label 7 roll -stim_base 7 \
-stim_file 8 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[2] \
-stim_label 8 pitch -stim_base 8 \
-stim_file 9 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[3] \
-stim_label 9 yaw -stim_base 9 \
-stim_file 10 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[4] \
-stim_label 10 dS -stim_base 10 \
-stim_file 11 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[5] \
-stim_label 11 dL -stim_base 11 \
-stim_file 12 motion_files/${STUDY}${SUBJECTS[$n]}IMPEXP.motionall.1D[6] \
-stim_label 12 dP -stim_base 12 \
-gltsym "SYM: Fear_Emot -Neutral_Emot" -glt_label 1 "F.E.v.N.E." \
-gltsym "SYM: Happy_Emot -Neutral_Emot" -glt_label 2 "H.E.v.N.E." \
-gltsym "SYM: Fear_Emot -Happy_Emot" -glt_label 3 "F.E.v.H.E." \
-gltsym "SYM: Fear_Gender -Neutral_Gender" -glt_label 4 "F.G.v.N.G." \
-gltsym "SYM: Happy_Gender -Neutral_Gender" -glt_label 5 "H.G.v.N.G." \
-gltsym "SYM: Fear_Gender -Happy_Gender" -glt_label 6 "F.G.v.H.G." \
-full_first -fitts ${STUDY}${SUBJECTS[$n]}Fitts.zp.spikeShort.tshift.volreg.smooth.scaled.Decon.wglt \
-tout \
-fout \
-bucket ${STUDY}${SUBJECTS[$n]}IMPEXP.zp.spikeShort.tshift.volreg.smooth.scaled.Decon.wglt
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Subject Author Posted

Multiple run betas

Jatin November 10, 2008 11:10AM

Re: Multiple run betas

Jatin November 10, 2008 11:24AM