AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
November 18, 2008 04:33PM
Hi Joe,

Yes, I think you've got all that right. The mosaic center is derived from data that is always in the DICOM header, but Siemens doesn't always put slice information. I can not say why that is. If slice information is available, we use that to confirm the mosaic center. In our initial tests with oblique data, they were always the same if the slice data did exist. As you have seen, it may be different. In that case, the warning appears.

Because there is no available specification for Siemens implementation of mosaic format, we can not really pretend to completely understand the logic of this format. It's best to be aware that there could be a misinterpretation of the Siemens DICOM header information. A simple way to check for this is, as you suggested, to make sure the data aligns well with another reference dataset.
Subject Author Posted

Slice-based center is different from mosaic center

Joe Paxton November 14, 2008 02:16PM

Re: Slice-based center is different from mosaic center

Daniel Glen November 18, 2008 04:33PM