AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
December 10, 2008 04:25PM
Hi Tejas,

I think modern Philips scanners have some ability to
directly write NIfTI files, though last I knew, they
were writing the transformation incorrectly.

Otherwise, most major FMRI software packages should
be able to write it easily. In AFNI, you can write
NIfTI just by including the .nii suffix in the output
prefix of a command. Three examples:

3dcopy my_dset+orig new_dset.nii
to3d -prefix anat.nii anat*.dcm
3dbucket -prefix new_buck.nii stats1+orig'[0..4]' stats2+orig'[11..$]'

- rick

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Subject Author Posted

.nii data format

tejas December 10, 2008 02:38PM

Re: .nii data format

rick reynolds December 10, 2008 04:25PM

Re: .nii data format

Colm Connolly December 11, 2008 05:12AM

Re: .nii data format

rick reynolds December 11, 2008 11:01AM