AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Stathis
December 10, 2008 05:51PM
Dear AFNI,
First, congratulations for your blessed software, I swear by it.
I encountered an issue using to3d, trying to convert T1 axial dicoms coming from a SIEMENS TimTrio. The dicom header contains a first set of 0028 headers such as:
0028 0010 2 [1450 ] // IMG Rows// 128
0028 0011 2 [1460 ] // IMG Columns// 96

and then a second set:
0028 0010 2 [6106 ] // IMG Rows// 256
0028 0011 2 [6116 ] // IMG Columns// 192

to3d seems to pick the first set of dimensions, giving me a 96,128,768 image, instead of the correct 256,192,256

I know this is an ambiguous case and that there is no standard way of parsing it but I was wondering if you have encountered this issue before and whether there is any fix for it.

Thank you in advance.

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Subject Author Posted

converting old dicoms with duplicate header entries using to3d

Stathis December 10, 2008 05:51PM

Re: converting old dicoms with duplicate header entries using to3d

Daniel Glen December 10, 2008 05:58PM