AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 16, 2008 12:09PM
I've seen similar posts to this one, but none of the solutions suggested in those have solved my problem.

Here's the model.txt file (truncated after the first four subjects):

Data:Volume
Output:LME_results
MASK:automask+tlrc.BRIK
Model:Cond*Valence
COV:
RanEff: 1
VarStr: 0
CorStr: 0
SS:sequential
PosDecrease-PosView
positive*decrease-positive*view
NegDecrease-NegView
negative*decrease-negative*view
Clusters:
Subj Cond Valence InputFile
1002 decrease negative ./1002_slide_d_neg_mean_resampled_short+tlrc
1002 decrease positive ./1002_slide_d_pos_mean_resampled_short+tlrc
1002 view negative ./1002_slide_v_neg_mean_resampled_short+tlrc
1002 view positive ./1002_slide_v_pos_mean_resampled_short+tlrc
1003 decrease negative ./1003_slide_d_neg_mean_resampled_short+tlrc
1003 decrease positive ./1003_slide_d_pos_mean_resampled_short+tlrc
1003 view negative ./1003_slide_v_neg_mean_resampled_short+tlrc
1003 view positive ./1003_slide_v_pos_mean_resampled_short+tlrc
1004 decrease negative ./1004_slide_d_neg_mean_resampled_short+tlrc
1004 decrease positive ./1004_slide_d_pos_mean_resampled_short+tlrc
1004 view negative ./1004_slide_v_neg_mean_resampled_short+tlrc
1004 view positive ./1004_slide_v_pos_mean_resampled_short+tlrc
1005 decrease negative ./1005_slide_d_neg_mean_resampled_short+tlrc
1005 decrease positive ./1005_slide_d_pos_mean_resampled_short+tlrc
1005 view negative ./1005_slide_v_neg_mean_resampled_short+tlrc
1005 view positive ./1005_slide_v_pos_mean_resampled_short+tlrc


And here's the error message that occurs after it runs for a minute or so:

Error in if (RanEff) { : missing value where TRUE/FALSE needed
Execution halted

My version of AFNI is AFNI_2008_02_01_1144, compiled on May 30 of this year.

I eventually want to include covariates, which is why I'm using 3dLME.

Phil
Subject Author Posted

What's wrong with my model.txt file (3dLME)?

Phil Burton December 16, 2008 12:09PM

Re: What's wrong with my model.txt file (3dLME)?

Gang Chen December 16, 2008 12:24PM

Re: What's wrong with my model.txt file (3dLME)?

Phil Burton December 16, 2008 12:31PM

Re: What's wrong with my model.txt file (3dLME)?

Gang Chen December 16, 2008 12:54PM

Re: What's wrong with my model.txt file (3dLME)?

Phil Burton December 16, 2008 04:57PM

Re: What's wrong with my model.txt file (3dLME)?

Gang Chen December 16, 2008 05:20PM

Re: What's wrong with my model.txt file (3dLME)?

Phil Burton December 16, 2008 05:47PM

Re: What's wrong with my model.txt file (3dLME)?

Gang Chen December 16, 2008 05:56PM

Re: What's wrong with my model.txt file (3dLME)?

Gang Chen December 16, 2008 06:08PM