AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Zareal Wang
December 28, 2008 08:35PM
Hello experts, I am confused about slices pattern hidden in the raw data.
I tried Mricro, and this is what it says, yet the values changes(from slice 1) both in Cor(onal) and Tra(axial,it seems),yet the machine operator told me it should be altz/altplus:

. 1.sSliceArray.asSlice.0..sPosition.dSag . -1.031440726.sSliceArray.asSlice.0..sPosition.dCor . -15.65150047.sSliceArray.asSlice.0..sPosition.dTra . -14.94841931.sSliceArray.asSlice.0..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.0..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.0..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.0..dThickness . 5.sSliceArray.asSlice.0..dPhaseFOV . 220.sSliceArray.asSlice.0..dReadoutFOV . 220.sSliceArray.asSlice.0..dInPlaneRot


. 0.02792526803.sSliceArray.asSlice.1..sPosition.dSag . -0.8477646811.sSliceArray.asSlice.1..sPosition.dCor . -15.42232666.sSliceArray.asSlice.1..sPosition.dTra . -9.456266498.sSliceArray.asSlice.1..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.1..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.1..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.1..dThickness . 5.sSliceArray.asSlice.1..dPhaseFOV . 220.sSliceArray.asSlice.1..dReadoutFOV . 220.sSliceArray.asSlice.1..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.2..sPosition.dSag . -0.6640886358.sSliceArray.asSlice.2..sPosition.dCor . -15.19315284.sSliceArray.asSlice.2..sPosition.dTra . -3.964113689.sSliceArray.asSlice.2..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.2..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.2..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.2..dThickness . 5.sSliceArray.asSlice.2..dPhaseFOV . 220.sSliceArray.asSlice.2..dReadoutFOV . 220.sSliceArray.asSlice.2..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.3..sPosition.dSag . -0.4804125905.sSliceArray.asSlice.3..sPosition.dCor . -14.96397903.sSliceArray.asSlice.3..sPosition.dTra . 1.528039119.sSliceArray.asSlice.3..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.3..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.3..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.3..dThickness . 5.sSliceArray.asSlice.3..dPhaseFOV . 220.sSliceArray.asSlice.3..dReadoutFOV . 220.sSliceArray.asSlice.3..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.4..sPosition.dSag . -0.2967365452.sSliceArray.asSlice.4..sPosition.dCor . -14.73480522.sSliceArray.asSlice.4..sPosition.dTra . 7.020191928.sSliceArray.asSlice.4..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.4..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.4..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.4..dThickness . 5.sSliceArray.asSlice.4..dPhaseFOV . 220.sSliceArray.asSlice.4..dReadoutFOV . 220.sSliceArray.asSlice.4..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.5..sPosition.dSag . -0.1130604999.sSliceArray.asSlice.5..sPosition.dCor . -14.5056314.sSliceArray.asSlice.5..sPosition.dTra . 12.51234474.sSliceArray.asSlice.5..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.5..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.5..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.5..dThickness . 5.sSliceArray.asSlice.5..dPhaseFOV . 220.sSliceArray.asSlice.5..dReadoutFOV . 220.sSliceArray.asSlice.5..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.6..sPosition.dSag . 0.0706155454.sSliceArray.asSlice.6..sPosition.dCor . -14.27645759.sSliceArray.asSlice.6..sPosition.dTra . 18.00449754.sSliceArray.asSlice.6..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.6..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.6..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.6..dThickness . 5.sSliceArray.asSlice.6..dPhaseFOV . 220.sSliceArray.asSlice.6..dReadoutFOV . 220.sSliceArray.asSlice.6..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.7..sPosition.dSag . 0.2542915907.sSliceArray.asSlice.7..sPosition.dCor . -14.04728378.sSliceArray.asSlice.7..sPosition.dTra . 23.49665035.sSliceArray.asSlice.7..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.7..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.7..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.7..dThickness . 5.sSliceArray.asSlice.7..dPhaseFOV . 220.sSliceArray.asSlice.7..dReadoutFOV . 220.sSliceArray.asSlice.7..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.8..sPosition.dSag . 0.437967636.sSliceArray.asSlice.8..sPosition.dCor . -13.81810996.sSliceArray.asSlice.8..sPosition.dTra . 28.98880316.sSliceArray.asSlice.8..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.8..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.8..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.8..dThickness . 5.sSliceArray.asSlice.8..dPhaseFOV . 220.sSliceArray.asSlice.8..dReadoutFOV . 220.sSliceArray.asSlice.8..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.9..sPosition.dSag . 0.6216436813.sSliceArray.asSlice.9..sPosition.dCor . -13.58893615.sSliceArray.asSlice.9..sPosition.dTra . 34.48095597.sSliceArray.asSlice.9..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.9..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.9..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.9..dThickness . 5.sSliceArray.asSlice.9..dPhaseFOV . 220.sSliceArray.asSlice.9..dReadoutFOV . 220.sSliceArray.asSlice.9..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.10..sPosition.dSag . 0.8053197266.sSliceArray.asSlice.10..sPosition.dCor . -13.35976234.sSliceArray.asSlice.10..sPosition.dTra . 39.97310878.sSliceArray.asSlice.10..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.10..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.10..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.10..dThickness . 5.sSliceArray.asSlice.10..dPhaseFOV . 220.sSliceArray.asSlice.10..dReadoutFOV . 220.sSliceArray.asSlice.10..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.11..sPosition.dSag . 0.9889957719.sSliceArray.asSlice.11..sPosition.dCor . -13.13058852.sSliceArray.asSlice.11..sPosition.dTra . 45.46526159.sSliceArray.asSlice.11..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.11..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.11..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.11..dThickness . 5.sSliceArray.asSlice.11..dPhaseFOV . 220.sSliceArray.asSlice.11..dReadoutFOV . 220.sSliceArray.asSlice.11..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.12..sPosition.dSag . 1.172671817.sSliceArray.asSlice.12..sPosition.dCor . -12.90141471.sSliceArray.asSlice.12..sPosition.dTra . 50.9574144.sSliceArray.asSlice.12..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.12..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.12..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.12..dThickness . 5.sSliceArray.asSlice.12..dPhaseFOV . 220.sSliceArray.asSlice.12..dReadoutFOV . 220.sSliceArray.asSlice.12..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.13..sPosition.dSag . 1.356347863.sSliceArray.asSlice.13..sPosition.dCor . -12.6722409.sSliceArray.asSlice.13..sPosition.dTra . 56.4495672.sSliceArray.asSlice.13..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.13..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.13..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.13..dThickness . 5.sSliceArray.asSlice.13..dPhaseFOV . 220.sSliceArray.asSlice.13..dReadoutFOV . 220.sSliceArray.asSlice.13..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.14..sPosition.dSag . 1.540023908.sSliceArray.asSlice.14..sPosition.dCor . -12.44306708.sSliceArray.asSlice.14..sPosition.dTra . 61.94172001.sSliceArray.asSlice.14..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.14..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.14..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.14..dThickness . 5.sSliceArray.asSlice.14..dPhaseFOV . 220.sSliceArray.asSlice.14..dReadoutFOV . 220.sSliceArray.asSlice.14..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.15..sPosition.dSag . 1.723699953.sSliceArray.asSlice.15..sPosition.dCor . -12.21389327.sSliceArray.asSlice.15..sPosition.dTra . 67.43387282.sSliceArray.asSlice.15..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.15..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.15..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.15..dThickness . 5.sSliceArray.asSlice.15..dPhaseFOV . 220.sSliceArray.asSlice.15..dReadoutFOV . 220.sSliceArray.asSlice.15..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.16..sPosition.dSag . 1.907375998.sSliceArray.asSlice.16..sPosition.dCor . -11.98471946.sSliceArray.asSlice.16..sPosition.dTra . 72.92602563.sSliceArray.asSlice.16..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.16..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.16..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.16..dThickness . 5.sSliceArray.asSlice.16..dPhaseFOV . 220.sSliceArray.asSlice.16..dReadoutFOV . 220.sSliceArray.asSlice.16..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.17..sPosition.dSag . 2.091052044.sSliceArray.asSlice.17..sPosition.dCor . -11.75554564.sSliceArray.asSlice.17..sPosition.dTra . 78.41817844.sSliceArray.asSlice.17..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.17..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.17..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.17..dThickness . 5.sSliceArray.asSlice.17..dPhaseFOV . 220.sSliceArray.asSlice.17..dReadoutFOV . 220.sSliceArray.asSlice.17..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.18..sPosition.dSag . 2.274728089.sSliceArray.asSlice.18..sPosition.dCor . -11.52637183.sSliceArray.asSlice.18..sPosition.dTra . 83.91033125.sSliceArray.asSlice.18..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.18..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.18..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.18..dThickness . 5.sSliceArray.asSlice.18..dPhaseFOV . 220.sSliceArray.asSlice.18..dReadoutFOV . 220.sSliceArray.asSlice.18..dInPlaneRot . 0.02792526803.sSliceArray.asSlice.19..sPosition.dSag . 2.458404134.sSliceArray.asSlice.19..sPosition.dCor . -11.29719801.sSliceArray.asSlice.19..sPosition.dTra . 89.40248405.sSliceArray.asSlice.19..sNormal.dSag . 0.0333956446.sSliceArray.asSlice.19..sNormal.dCor . 0.0416679661.sSliceArray.asSlice.19..sNormal.dTra . 0.9985732379.sSliceArray.asSlice.19..dThickness . 5.sSliceArray.asSlice.19..dPhaseFOV . 220.sSliceArray.asSlice.19..dReadoutFOV . 220.sSliceArray.asSlice.19..dInPlaneRot


Is there any other way to get the hidden info about slice pattern? Shall Dimon work? Actually I can understand how Dimon work, it is the hardest and slowest command I have ever seen. Any suggestion would be highly appreciated. Thanks.
Reply Quote
RSS
Subject Author Posted

How can I acquire the slices pattern out of the raw data

Zareal Wang December 28, 2008 08:35PM

Re: How can I acquire the slices pattern out of the raw data

rick reynolds December 29, 2008 10:55AM

Re: How can I acquire the slices pattern out of the raw data

Zareal Wang December 29, 2008 07:37PM