AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 19, 2018 05:19PM
Hi

I tried this suggestion:

"To transform from TLRC space to MNI space, use the MNI FSL transformation matrix (mni_fsl2tal.1D) like this.

3dWarp -matvec_out2in mni_fsl2tal.1D -prefix dset_mni dset+tlrc "

but my resulting mask still says TLRC for space when I do 3dinfo -space

these are the commands I used:

$ 3dWarp -matvec_out2in mni_fsl2tal.1D -prefix 3dwarp_e mask_AD_TD_B_F+tlrc.

$ 3dinfo -space 3dwarp_e+tlrc.
TLRC

and I downloaded the mni_fsl2tal.1D file from [afni.nimh.nih.gov]

I am sure I am doing something wrong - can you help me understand what I am missing?
Subject Author Posted

Transforming a mask to MNI

siamak January 08, 2009 01:25PM

Re: Transforming a mask to MNI

Daniel Glen January 08, 2009 03:45PM

Re: Transforming a mask to MNI

siamak January 09, 2009 01:17PM

Re: Transforming a mask to MNI

Daniel Glen January 09, 2009 02:50PM

Re: Transforming a mask to MNI - new issue

Jane McGrath June 18, 2011 01:46AM

Re: Transforming a mask to MNI - new issue

Daniel Glen June 22, 2011 12:08PM

Re: Transforming a mask to MNI - new issue

prerona January 19, 2018 05:19PM

Re: Transforming a mask to MNI - new issue

Daniel Glen January 19, 2018 06:59PM

Re: Transforming a mask to MNI - new issue

prerona January 22, 2018 10:29AM

Re: Transforming a mask to MNI - new issue

dante.picchioni June 21, 2022 03:19PM

Re: Transforming a mask to MNI - new issue

ptaylor June 22, 2022 12:36PM

Re: Transforming a mask to MNI - new issue Attachments

dante.picchioni June 22, 2022 05:16PM

Re: Transforming a mask to MNI - new issue

ptaylor June 23, 2022 10:11AM

Re: Transforming a mask to MNI - new issue

dante.picchioni June 27, 2022 01:46PM

Re: Transforming a mask to MNI - new issue

Daniel Glen June 27, 2022 05:33PM

Re: Transforming a mask to MNI - new issue

dante.picchioni June 28, 2022 01:17PM