AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
Sarah
January 09, 2009 11:06AM
Hi,

I'm trying to run 3dLME and I get the following error message, which I imagine is the result of something very simple:

3dLME.R LME_80v50_HvE_NvC
Error: unexpected symbol in "3dLME.R"

Here is my textfile model.txt (it's really long so I've truncated it...hopefully something obvious will pop out):

Data:Volume
Output:LME_80v50_HvE_NvC
MASK:N49_anat_d_mask+tlrc.BRIK
Model:Priors*Difficulty*Stimtype
COV:
RanEff:1
VarStr:0
CorStr:0
SS:sequential
Noise80-Clear80
eighty*0*N-eighty*0*C
Noise50-Clear50
fifty*0*N-fifty*0*C
Hard80-Easy80
eighty*H*0-eighty*E*0
Hard50-Easy50
fifty*H*0-fifty*E*0

...

Clusters:4
Subj Priors Difficulty Stimtype InputFile
N015 fifty E N 'N015_50_eh_diff_func_d+tlrc[6]'
N015 fifty H N 'N015_50_eh_diff_func_d+tlrc[2]'
N015 eighty E N 'N015_80_eh_diff_func_d+tlrc[6]'
N015 eighty H N 'N015_80_eh_diff_func_d+tlrc[2]'
N016 fifty E N 'N016_50_eh_diff_func_d+tlrc[6]'
N016 fifty H N 'N016_50_eh_diff_func_d+tlrc[2]'
N016 eighty E N 'N016_80_eh_diff_func_d+tlrc[6]'
N016 eighty H N 'N016_80_eh_diff_func_d+tlrc[2]'
N017 fifty E N 'N017_50_eh_diff_func_d+tlrc[6]'
N017 fifty H N 'N017_50_eh_diff_func_d+tlrc[2]'
N017 eighty E N 'N017_80_eh_diff_func_d+tlrc[6]'
N017 eighty H N 'N017_80_eh_diff_func_d+tlrc[2]'
N018 fifty E N 'N018_50_eh_diff_func_d+tlrc[6]'
N018 fifty H N 'N018_50_eh_diff_func_d+tlrc[2]'
N018 eighty E N 'N018_80_eh_diff_func_d+tlrc[6]'
N018 eighty H N 'N018_80_eh_diff_func_d+tlrc[2]'

...

LG fifty E C '../../PPAB/fmri/group/LG_50_eh_func_d+tlrc[2]'
LG fifty H C '../../PPAB/fmri/group/LG_50_eh_func_d+tlrc[6]'
LG eighty E C '../../PPAB/fmri/group/LG_80_eh_func_d+tlrc[2]'
LG eighty H C '../../PPAB/fmri/group/LG_80_eh_func_d+tlrc[6]'
RT fifty E C '../../PPAB/fmri/group/RT_50_eh_func_d+tlrc[2]'
RT fifty H C '../../PPAB/fmri/group/RT_50_eh_func_d+tlrc[6]'
RT eighty E C '../../PPAB/fmri/group/RT_80_eh_func_d+tlrc[2]'
RT eighty H C '../../PPAB/fmri/group/RT_80_eh_func_d+tlrc[6]'
CB fifty E C '../../PPAB/fmri/group/CB_50_eh_func_d+tlrc[2]'
CB fifty H C '../../PPAB/fmri/group/CB_50_eh_func_d+tlrc[6]'
CB eighty E C '../../PPAB/fmri/group/CB_80_eh_func_d+tlrc[2]'
CB eighty H C '../../PPAB/fmri/group/CB_80_eh_func_d+tlrc[6]'
MD fifty E C '../../PPAB/fmri/group/MD_50_eh_func_d+tlrc[2]'
MD fifty H C '../../PPAB/fmri/group/MD_50_eh_func_d+tlrc[6]'
MD eighty E C '../../PPAB/fmri/group/MD_80_eh_func_d+tlrc[2]'
MD eighty H C '../../PPAB/fmri/group/MD_80_eh_func_d+tlrc[6]'

...
Reply Quote
RSS
Subject Author Posted

3dLME error

Sarah January 09, 2009 11:06AM

Re: 3dLME error

Gang Chen January 09, 2009 12:52PM