AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 20, 2009 01:59PM
Unfortunately I didn't have success with the commands:

Dimon -save_file_list good.files -dicom_org -infile_pat '*' -quit

Dimon running, use <ctrl-c> to quit...

-- scanning for first volume
-- checking 2473 potential DICOM files... 2%** failed to read file '02274386' as dicom
** failed to read file '02274397' as dicom
** failed to read file '02274408' as dicom
** failed to read file '02274419' as dicom
** failed to read file '02274430' as dicom
** failed to read file '02274441' as dicom
** failed to read file '02274452' as dicom
** failed to read file '02274463' as dicom
** failed to read file '02274474' as dicom
** failed to read file '02274485' as dicom
** failed to read file '02274496' as dicom
** failed to read file '02274507' as dicom
** failed to read file '02274518' as dicom
** failed to read file '02274529' as dicom
** failed to read file '02274540' as dicom
** failed to read file '02274551' as dicom
79%++ DICOM file has Rescale tags, enforcing them...
(no more Rescale tags messages will be printed)
91%** MRD: IMAGE_LOCATION and SLICE_LOCATION disagree:
z coord from IL = -72.052917, from SL = -72.232124
(using IMAGE_LOCATION)
100%
++ found 2457 DICOM files
-- dicom sort : 24 inversions, 16 non-DICOM files
(dicom_org was useful)

-- first volume found (1 slices)
-- scanning for additional volumes...
-- run 1: 1 2 3 (volume retry test for warning 'Vol toasted'...)
Dimon(5790) malloc: *** error for object 0x80f600: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
Dimon(5790) malloc: *** error for object 0x80f600: incorrect checksum for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
** MRD: failed to determine dicom image orientation
Dimon(5790) malloc: *** error for object 0x12000e: Non-aligned pointer being freed
*** set a breakpoint in malloc_error_break to debug
** failed to read file '02313281' as dicom
(retry OK - no errors)
Bus error

===

Any input would be greatly appreciated!

Andrew
Subject Author Posted

GERT_Reco scripts

Andrew DeMarco January 19, 2009 01:56PM

Re: GERT_Reco scripts

rick reynolds January 20, 2009 09:30AM

Re: GERT_Reco scripts

Andrew DeMarco January 20, 2009 01:59PM

Re: GERT_Reco scripts

rick reynolds January 21, 2009 07:12AM

Re: GERT_Reco scripts

Andrew DeMarco January 21, 2009 02:58PM

Re: GERT_Reco scripts

rick reynolds January 22, 2009 08:58AM