Hi,
My problem is getting a particular 3dDeconvolve command to work (estimating the shape of the HRF). Whenever I try to run the command, I get the following error:
"** FATAL ERROR: '-stim_times 1' file '../times_allRuns/CS_minus_C_times_sub_1.1D' has 1 auxiliary values per time point"
Below are two things: (1) the 3dDeconvolve command, and (2) the content of one of the text files with the start:end times that the command is reading in (the rest of the text files are formatted in the same way as the example that I provide; the format is six rows of start:end times that correspond to the six runs). I suspect that the code used in my command is old by my AFNI version's standards. My version of AFNI is AFNI_2008_07_18_1710.
Thank you for your time.
- Andrew
3dDeconvolve command:
3dDeconvolve -input S01_EP_TRDsNSI+tlrc.BRIK -mask S01_EP_BrainMask+tlrc. \
-polort A \
-nobout \
-noFDR \
-concat runs.1D \
-num_stimts 6 \
-stim_times 1 'TENT(0,15,7)' -stim_label 1 CS_minus_C \
-stim_times 2 CS_minus_I_times_sub_1.txt 'TENT(0,15,7)' -stim_label 2 CS_minus_I \
-stim_times 3 CS_plus_C_times_sub_1.txt 'TENT(0,15,7)' -stim_label 3 CS_plus_C \
-stim_times 4 CS_plus_I_times_sub_1.txt 'TENT(0,15,7)' -stim_label 4 CS_plus_I \
-stim_times 5 US_times_sub_1.txt 'TENT(0,15,7)' -stim_label 5 US \
-stim_times 6 error_times_sub_1.txt 'TENT(0,15,7)' -stim_label 6 error \
-iresp 1 ./CS_minus_C \
-iresp 2 ./CS_minus_I \
-iresp 3 ./CS_plus_C \
-iresp 4 ./CS_plus_I \
-iresp 5 ./US \
-iresp 6 ./error \
-xsave \
-cbucket ./S01_TRDsNSI_deconv_betas \
-x1D S01_TRDsNSI_deconv.x1D \
-fout -tout -bucket ./S01_TRDsNSI_deconv
Content of text file (CS_minus_C_times_sub_1.txt):
0.00:1.00 11.51:12.51 35.71:36.71 98.24:99.24 102.28:103.28 131.19:132.19 152.17:153.17 188.76:189.76 194.36:195.36 198.79:199.79 215.35:216.35 224.16:225.16 246.74:247.74 250.08:251.08
8.94:9.94 13.91:14.91 39.36:40.36 68.84:69.84 74.15:75.15 115.49:116.49 146.13:147.13 173.93:174.93 184.47:185.47 221.42:222.42 225.72:226.72 232.22:233.22 258.38:259.38
0.00:1.00 8.34:9.34 17.07:18.07 25.77:26.77 51.03:52.03 86.37:87.37 103.43:104.43 107.38:108.38 125.14:126.14 166.78:167.78 186.97:187.97 192.33:193.33 204.99:205.99 260.78:261.78
3.93:4.93 12.18:13.18 27.85:28.85 34.73:35.73 38.00:39.00 66.74:67.74 70.17:71.17 93.04:94.04 95.67:96.67 100.11:101.11 147.99:148.99 166.90:167.90 174.08:175.08 189.40:190.40
3.65:4.64 10.49:11.49 18.33:19.33 26.72:27.72 40.78:41.78 44.73:45.73 60.41:61.41 76.93:77.93 112.63:113.63 136.89:137.89 163.26:164.26 216.57:217.57 224.01:225.01 237.28:238.28
0.00:1.00 3.46:4.46 14.40:15.40 37.19:38.19 65.18:66.18 86.24:87.24 109.03:110.03 173.36:174.36 181.88:182.88 242.55:243.55 252.40:253.40 255.94:256.94
