AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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BrianB
February 04, 2009 01:26PM
**First issue, why am I receiving the following errors and how do I remedy it?**
________________________________________________________
Trial 1:
3dROIstats -mask 'TT_Daemon::amygdala' stats.s9999+tlrc.'[1]'
File Sub-brick Mean_71
*+ WARNING: Input dataset stats.s1018+tlrc.[1] is different size than mask - skipping
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Trial 2:
3dcalc -a stats.s9999+tlrc. -b 'TT_Daemon::amygdala' -expr 'a*step(b)' -prefix ROI.Amgy -datum short
++ 3dcalc: AFNI version=AFNI_2008_07_18_1710 (Jan 23 2009) [32-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: dataset TT_Daemon::amygdala differs in size from others
__________________________________________________________
stats (func dataset) was processed by afni_proc.py using the defualts then adwarped with anat that was talairached by hand.

**Second issue, is it incorrect to create a mask this way?**

Trial 3:
3dfractionize -template stats.s9999+tlrc -input 'TT_Daemon::amygdala' -clip 0.5 -preserve -prefix ROI.Amyg
++ 3dfractionize: AFNI version=AFNI_2008_07_18_1710 (Feb 4 2009) [32-bit]
++ Authored by: RW Cox
++ Found 1 distinct nonzero values in input.
-- Writing 294 nonzero voted voxels to dataset ./ROI.Amyg+tlrc.BRIK
3dROIstats -mask ROI.Amyg+tlrc 'stats.s9999+tlrc[1]'
File Sub-brick Mean_71
stats.s9999+tlrc[1] 0[Hostile_A] -0.079870

Subject Author Posted

ROIs Errors

BrianB February 04, 2009 01:26PM

Re: ROIs Errors

rick reynolds February 04, 2009 04:17PM