Hi all,

I'm using the latest afni which I downloaded this morning (GMT) and am trying to use align_epi_anat.py but am having problems.

I have an anat.nii file which I also copyed to anat+orig. with 3dcopy

when running 3dAttrubute on both these files I get the following:

colmconn@cortex:/scratch/deoblique/auto> 3dAttribute DELTA anat+orig.
++ Environment variable AFNI_VERSION_CHECK already set to 'NO'. Value of 'NO' from /home/thpsy/colmconn/.afnirc is ignored.
++ Environment variable AFNI_NOSPLASH already set to 'YES'. Value of 'YES' from /home/thpsy/colmconn/.afnirc is ignored.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as ./anat+orig.BRIK,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:./anat+orig.BRIK is 1.273800 degrees from plumb.
0.898438 -0.898438 0.9
colmconn@cortex:/scratch/deoblique/auto> 3dAttribute DELTA anat.nii
++ Environment variable AFNI_VERSION_CHECK already set to 'NO'. Value of 'NO' from /home/thpsy/colmconn/.afnirc is ignored.
++ Environment variable AFNI_NOSPLASH already set to 'YES'. Value of 'YES' from /home/thpsy/colmconn/.afnirc is ignored.
*+ WARNING: If you are performing spatial transformations on an oblique dset,
such as anat.nii,
or viewing/combining it with volumes of differing obliquity,
you should consider running:
3dWarp -deoblique
on this and other oblique datasets in the same session.
See 3dWarp -help for details.
++ Oblique dataset:anat.nii is 1.273800 degrees from plumb.


The DELTA values are missing from the NIfTI file. I can but presume this is a bug, unless I'm doing something catastrophically stupid.

Bye,

Colm.